View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_low_22 (Length: 500)
Name: NF2272_low_22
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_low_22 |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 81 - 485
Target Start/End: Complemental strand, 12163155 - 12162741
Alignment:
| Q |
81 |
ggactttggtttgatttttaaagtcacctatttgagaggtagtccaaccctaatnnnnnnnntagatgtctgtttggcaactagattagtttcataatgg |
180 |
Q |
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| T |
12163155 |
ggactttggtttgatttttaaagtcacctatttgagaggtagtccaaccctaataaaaaaa-tagatgtctttttggcaactagattagtttcataatgg |
12163057 |
T |
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| Q |
181 |
acctaaaagacctaagccgtgagaatattttgaagtatctagtggaggtttaagattttaatcatggtggttacaaaaaacgtaaaaaatcatttttggg |
280 |
Q |
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| T |
12163056 |
acctaaaagacctaagccgtgagaatattttgaagtatctagtggaggtttaagattttaatcatggtggttacaaaaaacgtaaaaaatcatttttggg |
12162957 |
T |
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| Q |
281 |
tagatnnnnnnnn-ttcttggtagtgtag------taattttgttcatctatctatgaagattggttcaattgttatttactccatcatatgttgcattg |
373 |
Q |
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| T |
12162956 |
tagataaaaaaaaattcttggtagtgtaggtgtagtaattttgttcatctatctatgaagattggttcaattgttatttactccatcatatgttgcattg |
12162857 |
T |
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| Q |
374 |
attcttctactatatat----ctaactcgatattaacaatgctttattgcatagagactaaagtgaagttgtatttcatttaccattctcacgatctcaa |
469 |
Q |
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| T |
12162856 |
attcttctactatatatatatctaactcgatattaacaatgctttattgcatggagactaaagtgaagttgtatttcatttaccattctcacgatctcaa |
12162757 |
T |
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| Q |
470 |
agacatcataataaag |
485 |
Q |
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| T |
12162756 |
agacatcataataaag |
12162741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 12163228 - 12163186
Alignment:
| Q |
21 |
tagtataacataaaatacgtttaattggtaagatgttgaaaga |
63 |
Q |
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| T |
12163228 |
tagtataacataaaatacgtttaactggtaagatgttgaaaga |
12163186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 131
Target Start/End: Complemental strand, 163950 - 163908
Alignment:
| Q |
89 |
gtttgatttttaaagtcacctatttgagaggtagtccaaccct |
131 |
Q |
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| T |
163950 |
gtttgatttctaaagtcacctatttgagaggtagccaaaccct |
163908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 131
Target Start/End: Complemental strand, 13666335 - 13666293
Alignment:
| Q |
89 |
gtttgatttttaaagtcacctatttgagaggtagtccaaccct |
131 |
Q |
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| T |
13666335 |
gtttgatttctaaagtcacctatttgagaggtagccaaaccct |
13666293 |
T |
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