View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2272_low_23 (Length: 497)
Name: NF2272_low_23
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_low_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 20 - 492
Target Start/End: Original strand, 6083210 - 6083682
Alignment:
| Q |
20 |
taatgaaggtttctgtagaattcgatcaagctcgcgttgttttagaggagcagctatcagagaaaagtaaaaggcttgctaaaactgtgattgaaaattc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6083210 |
taatgaaggtttctgtagaattcgatcaagctcgcgttgttttagaggagcagctatcagagaaaagtaaaaggcttgctaaaactgtgattgaaaattc |
6083309 |
T |
|
| Q |
120 |
ttatcttaacaaatctattatcgcgaaagacaatttgattgatgatctgagaagacaattgaatcaagcagacgtggatcgtaatgcattgatgattgga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6083310 |
ttatcttaacaaatctattatcgcgaaagacaatttgattgatgatctgagaagacaattgaatcaagcagacgtggatcgtaatgcattgatgattgga |
6083409 |
T |
|
| Q |
220 |
ttagagtctgttgagaaggataatacttctctgatgtatgaggctcgagtgcttcaaaaggaacttgatattcgaaatgaagtccaattttcaagagtaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6083410 |
ttagagtctgttgagaaggataatacttctctgatgtatgaggctcgagtgcttcaaaaggaacttgatattcgaaatgaagtccaattttcaagagtaa |
6083509 |
T |
|
| Q |
320 |
tgctttcgcaaacagcgtcaaaactgttgcaacttgaatctgagattgattccaaaaaccaagtagcatcggagcagcctagaagtcatgttgcattgca |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6083510 |
tgctttcgcaaacagcgtcaaaactgttgcaacttgagtctgagattgattccaaaaaccaagtagcatcggagcagcctagaagtcatgttgcattgca |
6083609 |
T |
|
| Q |
420 |
agagttatctttggcatcaatgtcttacattggcagtgatgacaatgttagctgtggggagtcctttgcttct |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
6083610 |
agagttatctttggcatcaatgtcttacattggcagtgatgacaatgttagctgcggggagtccttggcttct |
6083682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 301
Target Start/End: Complemental strand, 39108062 - 39107915
Alignment:
| Q |
154 |
ttgattgatgatctgagaagacaattgaatcaagcagacgtggatcgtaatgcattgatgattggattagagtctgttgagaaggataatacttctctga |
253 |
Q |
| |
|
|||||||| ||||||| ||||||||||| |||||| || | |||| || |||| ||||| || |||||||||| |||||| |||||| ||||||||| |
|
|
| T |
39108062 |
ttgattgaggatctgaaaagacaattgactcaagctgaggcagatcatagtgcactgatggttagattagagtccactgagaaagataatgcttctctga |
39107963 |
T |
|
| Q |
254 |
tgtatgaggctcgagtgcttcaaaaggaacttgatattcgaaatgaag |
301 |
Q |
| |
|
||||||| ||||| ||| ||||||| || || || |||||||||| |
|
|
| T |
39107962 |
catatgaggtccgagtacttgaaaaggagctggagatccgaaatgaag |
39107915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 475
Target Start/End: Complemental strand, 39107438 - 39107390
Alignment:
| Q |
427 |
tctttggcatcaatgtcttacattggcagtgatgacaatgttagctgtg |
475 |
Q |
| |
|
||||||||||||| |||| | ||||||||||||||||| |||||||||| |
|
|
| T |
39107438 |
tctttggcatcaacgtctgatattggcagtgatgacaaggttagctgtg |
39107390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University