View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2272_low_26 (Length: 476)
Name: NF2272_low_26
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_low_26 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 55 - 471
Target Start/End: Original strand, 35703175 - 35703591
Alignment:
| Q |
55 |
ttaatttaatttaattttgtaaatgtaaactcaactaaggtgtatgaagcaggtgtagtgagctcttccatttagcgatttaactacttgtgcattgaaa |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35703175 |
ttaatttaatttaattttgtaaatgtaaactcaactaaggtgtatgaagcaggtgtagtgagctcttccatttagcgatttaactacttgtgcattgaaa |
35703274 |
T |
|
| Q |
155 |
actacttatgcttttcagatactgggctttggcggtaccaacttatctgatggtgaccattgtattaatgttggtattctacattggccttaacttcatg |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35703275 |
actacttatgcttttcagatactgggctttggcggtaccaacttatctgatggtgaccattgtattaatgttggtattctacattggccttaacttcatg |
35703374 |
T |
|
| Q |
255 |
tcaacaccttctcctgcatccataaacacagtttatggtgagtttagtgcagaattttttaccagtgtgggtgtggttaattttgattcctagatttttc |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35703375 |
tcaacaccttctcctgcatccataaacacagtttatggtgagtttagtgcagaattttttagcagtgtgggtgtgcttaattttgattcctagatttttc |
35703474 |
T |
|
| Q |
355 |
cttcctaagctttttgcacatgtgaataatttatttatttatctgcatgaaaaacttgtgtttgagtcctcttcatctaagttatgtcattttagcattg |
454 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35703475 |
cttcctaagctttttacacatgtgaataatttatttatttatctgcatgaaaaacttgtgttcgagtccttttcatctaagttatgtcattttagcattg |
35703574 |
T |
|
| Q |
455 |
aagaatttcatttcagt |
471 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
35703575 |
aagaatttcatttcagt |
35703591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 153 - 350
Target Start/End: Original strand, 7957002 - 7957199
Alignment:
| Q |
153 |
aaactacttatgcttttcagatactgggctttggcggtaccaacttatctgatggtgaccattgtattaatgttggtattctacattggccttaacttca |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7957002 |
aaactacttatgcttttcagatactgggctttggcagtaccaacttatgtgatggtgaccattgtattaatgttggcattctacattggccttaacttca |
7957101 |
T |
|
| Q |
253 |
tgtcaacaccttctcctgcatccataaacacagtttatggtgagtttagtgcagaattttttaccagtgtgggtgtggttaattttgattcctagatt |
350 |
Q |
| |
|
|||||||||| |||||||||||| ||||| |||||| ||||||||||| | || ||| ||||| || || |||||||||||||||||||| ||||||| |
|
|
| T |
7957102 |
tgtcaacaccatctcctgcatccttaaacgcagtttttggtgagtttaatacataatattttagcaatgcgggtgtggttaattttgattgctagatt |
7957199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University