View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2272_low_28 (Length: 465)

Name: NF2272_low_28
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2272_low_28
NF2272_low_28
[»] chr3 (13 HSPs)
chr3 (18-389)||(34467126-34467497)
chr3 (18-179)||(27625508-27625667)
chr3 (18-179)||(34511281-34511440)
chr3 (18-131)||(34477335-34477448)
chr3 (385-458)||(34466342-34466418)
chr3 (18-138)||(34462476-34462596)
chr3 (18-145)||(34486521-34486637)
chr3 (18-69)||(34516891-34516942)
chr3 (18-69)||(34526059-34526110)
chr3 (17-55)||(27616499-27616537)
chr3 (110-151)||(27616373-27616414)
chr3 (110-151)||(34505225-34505266)
chr3 (18-55)||(34505355-34505392)
[»] chr2 (2 HSPs)
chr2 (18-67)||(10531070-10531119)
chr2 (18-69)||(10524761-10524812)


Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 34467497 - 34467126
Alignment:
Q  18 taatattctttccattttaaggttactttgaaagatacaggaggtttgtgtagatgattatatgatatcattcttttattctccctaacttgttcttcca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34467497 taatattctttccattttaaggttactttgaaagatacaggaggtttgtgtagatgattatatgatatcattcttttattctccctaacttgttcttcca 34467398  T
Q  118 aaattatatcttaaatttgatcaagggattcacacagtgtatgcaagtacatacacccacttttcaattttccagtgttgcaacaggttgagatggaaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34467397 aaattatatcttaaatttgatcaagggattcacacagtgtatgcaagtacatacaccgacttttcaattttccagtgttgcaacaggttgagatggaaat 34467298  T
Q  218 ggtgagcaacaatgctcattgagttattacaaggtaacaggaattaattccgtcaactagtattaagaataatcaattttataagaaactatgattttga 317  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34467297 ggtgaggaacaatgctcattgagttattacaaggtaacaggaattaattccgtcaactagtattaagaataatcaattttataagaaactatgattttga 34467198  T
Q  318 ttttgacaagaaagaaaccattatagaaattggaaaataaccaaaaactagctggcatgaaaattcaatttg 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34467197 ttttgacaagaaagaaaccattatagaaattggaaaataaccaaaaactagctggcatgaaaattcaatttg 34467126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 27625667 - 27625508
Alignment:
Q  18 taatattctttccattttaaggttactttgaaagatacaggaggtttgtgtagatgattatatgatatcattcttttattctccctaacttgttcttcca 117  Q
    ||||||||||||  |||||||||| ||||||||||||||  ||||||| ||||||||| ||||||| ||||||| |||| |||||||| |||||||||||    
T  27625667 taatattctttctgttttaaggttgctttgaaagataca--aggtttgcgtagatgataatatgatttcattctcttatcctccctaatttgttcttcca 27625570  T
Q  118 aaattatatcttaaatttgatcaagggattcacacagtgtatgcaagtacatacacccactt 179  Q
    ||||||||||||||||||||| |||||| ||||| ||||||||| |||||||||||||||||    
T  27625569 aaattatatcttaaatttgattaagggagtcacatagtgtatgctagtacatacacccactt 27625508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 34511440 - 34511281
Alignment:
Q  18 taatattctttccattttaaggttactttgaaagatacaggaggtttgtgtagatgattatatgatatcattcttttattctccctaacttgttcttcca 117  Q
    ||||||||||||  |||||||||| ||||||||||||||  ||||||| ||||||||| ||||||| ||||||| |||| |||||||| |||||||||||    
T  34511440 taatattctttctgttttaaggttgctttgaaagataca--aggtttgcgtagatgataatatgatttcattctcttatcctccctaatttgttcttcca 34511343  T
Q  118 aaattatatcttaaatttgatcaagggattcacacagtgtatgcaagtacatacacccactt 179  Q
    ||||||||||||||||||||| |||||| ||||| ||||||||| |||||||||||||||||    
T  34511342 aaattatatcttaaatttgattaagggagtcacatagtgtatgctagtacatacacccactt 34511281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 34477448 - 34477335
Alignment:
Q  18 taatattctttccattttaaggttactttgaaagatacaggaggtttgtgtagatgattatatgatatcattcttttattctccctaacttgttcttcca 117  Q
    ||||||| ||||| |||||||| ||||||| |||||||||||||| || ||||||||| |||||||||||||||  | ||||| |||| | ||||||||     
T  34477448 taatattatttccgttttaaggctactttggaagatacaggaggtgtgagtagatgataatatgatatcattctgatgttctctctaattagttcttccg 34477349  T
Q  118 aaattatatcttaa 131  Q
    ||||||||||||||    
T  34477348 aaattatatcttaa 34477335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 385 - 458
Target Start/End: Complemental strand, 34466418 - 34466342
Alignment:
Q  385 atttgaacccttttcggaaattaaataaaactag---ttttactataaaataaaaaacataagaacactagaataat 458  Q
    ||||||| |||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  34466418 atttgaatcctttttggaaattaaataaaactagctgttttactataaaataaaaaacataagaacactagaataat 34466342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 34462596 - 34462476
Alignment:
Q  18 taatattctttccattttaaggttactttgaaagatacaggaggtttgtgtagatgattatatgatatcattcttttattctccctaacttgttcttcca 117  Q
    ||||||||||||  || |||||||  |||  |||||||||||||| || ||||||||| |||| ||||||||||  | ||||| |||| | ||||||||     
T  34462596 taatattctttctgttgtaaggtttttttcgaagatacaggaggtgtgagtagatgataatataatatcattctgatgttctctctaattagttcttccg 34462497  T
Q  118 aaattatatcttaaatttgat 138  Q
    |||||||||||||||||||||    
T  34462496 aaattatatcttaaatttgat 34462476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 34486637 - 34486521
Alignment:
Q  18 taatattctttccattttaaggttactttgaaagatacaggaggtttgtgtagatgattatatgatatcattcttttattctccctaacttgttcttcca 117  Q
    ||||||||||||| |||||||||||| |||||||||||||||||| ||          ||||||||||| | || | ||||||||||| || || |||||    
T  34486637 taatattctttccgttttaaggttacattgaaagatacaggaggtgtg----------tatatgatatcttgctctcattctccctaa-ttttttttcca 34486549  T
Q  118 aaattatatcttaaatttgatcaaggga 145  Q
    |||||||||||||| |||||| ||||||    
T  34486548 aaattatatcttaactttgattaaggga 34486521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 34516942 - 34516891
Alignment:
Q  18 taatattctttccattttaaggttactttgaaagatacaggaggtttgtgta 69  Q
    |||||||||||||||||||||||||| |||||||||||  ||||| ||||||    
T  34516942 taatattctttccattttaaggttacattgaaagatacgagaggtgtgtgta 34516891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 34526110 - 34526059
Alignment:
Q  18 taatattctttccattttaaggttactttgaaagatacaggaggtttgtgta 69  Q
    |||||||||||||||||||||||||| |||||||||||  ||||| ||||||    
T  34526110 taatattctttccattttaaggttacattgaaagatacgagaggtatgtgta 34526059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 27616537 - 27616499
Alignment:
Q  17 ataatattctttccattttaaggttactttgaaagatac 55  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  27616537 ataatgttctttccattttaaggttacattgaaagatac 27616499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 27616414 - 27616373
Alignment:
Q  110 ttcttccaaaattatatcttaaatttgatcaagggattcaca 151  Q
    ||||| ||||||||||||||||||||||| |||||| |||||    
T  27616414 ttcttgcaaaattatatcttaaatttgattaagggagtcaca 27616373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 34505266 - 34505225
Alignment:
Q  110 ttcttccaaaattatatcttaaatttgatcaagggattcaca 151  Q
    ||||| ||||||||||||||||||||||| |||||| |||||    
T  34505266 ttcttgcaaaattatatcttaaatttgattaagggagtcaca 34505225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 34505392 - 34505355
Alignment:
Q  18 taatattctttccattttaaggttactttgaaagatac 55  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  34505392 taatgttctttccattttaaggttacattgaaagatac 34505355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 10531119 - 10531070
Alignment:
Q  18 taatattctttccattttaaggttactttgaaagatacaggaggtttgtg 67  Q
    |||||||||||||||||||||||||||||| ||||||| |||||| ||||    
T  10531119 taatattctttccattttaaggttactttggaagatacgggaggtatgtg 10531070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 10524812 - 10524761
Alignment:
Q  18 taatattctttccattttaaggttactttgaaagatacaggaggtttgtgta 69  Q
    ||||||||||||| |||||||||||| ||| |||||||||||||| ||||||    
T  10524812 taatattctttccgttttaaggttaccttggaagatacaggaggtctgtgta 10524761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University