View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2272_low_31 (Length: 454)
Name: NF2272_low_31
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_low_31 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-165; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 101 - 454
Target Start/End: Complemental strand, 45091016 - 45090648
Alignment:
| Q |
101 |
actgtgctccacgtttgcggcggtggtggtggattcagatcccgcttcttc---------------ctttctcatgcatacgcttctttcttcgcagctt |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
45091016 |
actgtgctccacgtttgcggcggtggtggtggattcagatcccgcttcttcttccaacgcttcttcctttctcatgcatacgcttctttcttagcagctt |
45090917 |
T |
|
| Q |
186 |
ctcaaatcacttgatctcctttgcatcagtacattacggggaatcaatgagtatcaatcaaatctacaatggcctcattgatgtaactgtttgtagttga |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45090916 |
ctcaaatcacttgatctcctttgcatcagtacattacggggaatcaatgagtatcaatcaaatctccaatggcctcattgatgtaactgtttgtagttga |
45090817 |
T |
|
| Q |
286 |
ttgcagtcgtgcatgtttgtttgataatttattaaatatcttgtttccaaacaaaactaagtataaattttatttggtatctgtgtacgttttcacagtt |
385 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
45090816 |
ttgcagtcgtgcatgtttgtttgttaatttattaaatatcttgtttccaaacaaaactaagtataaatttgatttggtatctgtgtacgttttcacagtt |
45090717 |
T |
|
| Q |
386 |
aaatcatagtacatggttccgtaagtttcagtgtaacaggataaatctatattttgcacttttgaggta |
454 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45090716 |
aaatcatagtacatggttcagtaagtttcagtgtaacaggataaatctatattttgcaattttgaggta |
45090648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 11074716 - 11074788
Alignment:
| Q |
143 |
cgcttcttcctttctcatgcatacgcttctttcttcgcagcttctcaaatcacttgatctcctttgcatcagt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11074716 |
cgcttcttcctttctcatgcatacgcttctttcttcgcagcttctcaaatcacttgatctcctttgcatcagt |
11074788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 11073655 - 11073765
Alignment:
| Q |
4 |
aaccataccgctagttannnnnnncacataccacagcctacatctcataactggagctttctagtataggacatattattattaagactgttattaaact |
103 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||| | |
|
|
| T |
11073655 |
aaccataccgctagttatttttttcacataccacaacctacatctcaaaactggagctttctagtatatgacatattattattaagattgttattaaatt |
11073754 |
T |
|
| Q |
104 |
gtgctccacgt |
114 |
Q |
| |
|
||||||||||| |
|
|
| T |
11073755 |
gtgctccacgt |
11073765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 37265999 - 37266109
Alignment:
| Q |
4 |
aaccataccgctagttannnnnnncacataccacagcctacatctcataactggagctttctagtataggacatattattattaagactgttattaaact |
103 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37265999 |
aaccataccgctagttatttttttcacataccacaacctacatctcacaactggagctttctagtataggacatattattattaagactgttattaaact |
37266098 |
T |
|
| Q |
104 |
gtgctccacgt |
114 |
Q |
| |
|
|||||||||| |
|
|
| T |
37266099 |
ttgctccacgt |
37266109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 37266985 - 37267057
Alignment:
| Q |
143 |
cgcttcttcctttctcatgcatacgcttctttcttcgcagcttctcaaatcacttgatctcctttgcatcagt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37266985 |
cgcttcttcctttctcatgcatacgcttctttcttcgcagcttctcaaatcacttgatctcctttgcatcagt |
37267057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 17962451 - 17962522
Alignment:
| Q |
144 |
gcttcttcctttctcatgcatacgcttctttcttcgcagcttctcaaatcacttgatctcctttgcatcagt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
17962451 |
gcttcttcctttctcatgcatacgcttctttcttcacagcttctcaaatcacttgatctcctttgcatcagt |
17962522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 17961439 - 17961512
Alignment:
| Q |
38 |
agcctacatctcataactggagctttctagtataggacatattattattaagactgttattaaactgtgctcca |
111 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17961439 |
agcctacatctcataacttgagctttctagtataggagatattattattaagactgttattaaactgcgctcca |
17961512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University