View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_low_35 (Length: 423)
Name: NF2272_low_35
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 43077063 - 43076660
Alignment:
| Q |
1 |
aacacaaacgctttagaaaaatcttctggggaatcataatcttcctcttcattgtcctagtaacaatcctaatcatttgggctgtcttaaaaccttctaa |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43077063 |
aacacaaacgcttcagaaaaatcttctggggaatcataatcttcctcttcattgtcctagtaacaatcctaatcatttgggctgtcttaaaaccttctaa |
43076964 |
T |
|
| Q |
101 |
accttctttcattctccaagatgtcactgtttacgctttcaatgccacagttccaaatttcttaacctcaaatttccaagtcacagtttcttcacgtaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43076963 |
accttctttcattctccaagatgtcactgtttacgctttcaacgccacagttccaaatttcttaacctcaaatttccaagtcacagtttcttcacgtaat |
43076864 |
T |
|
| Q |
201 |
cccaacgataaaattggtatctactatgatcgtcttgattcttacgtcacatcccggacccaaaaaattacttacagaaccgccatacctccgtcgtatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
43076863 |
cccaacgataaaattggtatctactacgatcgtcttgattcttacgtcacataccggagccaacaaattacttacagaaccgccatacctccgtcgtatc |
43076764 |
T |
|
| Q |
301 |
agggacacaaagaggttgatgtttggtctccgtttgtttacggaacaaacgttccggtagctccatataactctgttgctcttagccaagaccaggataa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43076763 |
agggacacaaagaggttgatgtttggtctccgtttgtttacggaacaaacgttccggtagctccatataactctgttgctcttagccaagaccaggataa |
43076664 |
T |
|
| Q |
401 |
cggt |
404 |
Q |
| |
|
|||| |
|
|
| T |
43076663 |
cggt |
43076660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 197 - 404
Target Start/End: Complemental strand, 43087094 - 43086887
Alignment:
| Q |
197 |
taatcccaacgataaaattggtatctactatgatcgtcttgattcttacgtcacatcccggacccaaaaaattacttacagaaccgccatacctccgtcg |
296 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||| |
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|
| T |
43087094 |
taatcccaacaataaaatcggtatctactacgatcgtcttgattcttacgtcacataccggagccaacaaattacttacagaaccgccatacctccgtcg |
43086995 |
T |
|
| Q |
297 |
tatcagggacacaaagaggttgatgtttggtctccgtttgtttacggaacaaacgttccggtagctccatataactctgttgctcttagccaagaccagg |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43086994 |
tatcagggacacaaagaggttgatgtttggtctccgtttgtttacggaacaaacgttccggtagctccatataactctgttgctcttagccaagaccagg |
43086895 |
T |
|
| Q |
397 |
ataacggt |
404 |
Q |
| |
|
|||||||| |
|
|
| T |
43086894 |
ataacggt |
43086887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 197 - 404
Target Start/End: Complemental strand, 43090765 - 43090558
Alignment:
| Q |
197 |
taatcccaacgataaaattggtatctactatgatcgtcttgattcttacgtcacatcccggacccaaaaaattacttacagaaccgccatacctccgtcg |
296 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||| |
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|
| T |
43090765 |
taatcccaacaataaaatcggtatctactacgatcgtcttgattcttacgtcacataccggagccaacaaattacttacagaaccgccatacctccgtcg |
43090666 |
T |
|
| Q |
297 |
tatcagggacacaaagaggttgatgtttggtctccgtttgtttacggaacaaacgttccggtagctccatataactctgttgctcttagccaagaccagg |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43090665 |
tatcagggacacaaagaggttgatgtttggtctccgtttgtttacggaacaaacgttccggtagctccatataactctgttgctcttagccaagaccagg |
43090566 |
T |
|
| Q |
397 |
ataacggt |
404 |
Q |
| |
|
|||||||| |
|
|
| T |
43090565 |
ataacggt |
43090558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 43091251 - 43091050
Alignment:
| Q |
1 |
aacacaaacgctttagaaaaatcttctggggaatcataatcttcctcttcattgtcctagtaacaatcctaatcatttgggctgtcttaaaaccttctaa |
100 |
Q |
| |
|
||||||||||||| ||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43091251 |
aacacaaacgcttcagaaaaatcttctagg-aatcataatcttcctcttcatcgtcctagtaacaatcctaatcatttgggatgtcttaaaaccttctaa |
43091153 |
T |
|
| Q |
101 |
accttctttcattctccaagatgtcactgtttacgctttcaatgccacagttccaaatttcttaacctcaaatttccaagtcacagtttcttcacgtaat |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43091152 |
accgtctttcattctccaagatgtcactgtttacgctttcaacgccacagttcaaaatttcttaacctcaaatttccaagtcacagtttcttcacgtaat |
43091053 |
T |
|
| Q |
201 |
ccc |
203 |
Q |
| |
|
||| |
|
|
| T |
43091052 |
ccc |
43091050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 43092166 - 43092104
Alignment:
| Q |
1 |
aacacaaacgctttagaaaaatcttctggggaatcataatcttcctcttcattgtcctagtaa |
63 |
Q |
| |
|
||||||||||||| | |||| |||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
43092166 |
aacacaaacgcttcataaaactcttctggcgaatcataatcttcctcttcatcgtcctagtaa |
43092104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 153 - 343
Target Start/End: Complemental strand, 25247695 - 25247505
Alignment:
| Q |
153 |
ccaaatttcttaacctcaaatttccaagtcacagtttcttcacgtaatcccaacgataaaattggtatctactatgatcgtcttgattcttacgtcacat |
252 |
Q |
| |
|
|||||||||||||||||||| || ||||| ||| |||| || || |||||||||||||| || ||| | ||||| |||||||| ||| ||||| | || | |
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|
| T |
25247695 |
ccaaatttcttaacctcaaactttcaagtaacactttcgtctcgaaatcccaacgataacatcggtgtatactacgatcgtctcgatacttacatgacct |
25247596 |
T |
|
| Q |
253 |
cccggacccaaaaaattacttacagaaccgccatacctccgtcgtatcagggacacaaagaggttgatgtttggtctccgtttgtttacgg |
343 |
Q |
| |
|
||||| |||| | |||||| | | ||||||||||| || || || || || ||||| ||| ||| ||||||||||||||||||||||| |
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|
| T |
25247595 |
accggagccaacagattactctccggaccgccataccgccttcttaccaaggtcacaatgagtatgacgtttggtctccgtttgtttacgg |
25247505 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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