View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_low_40 (Length: 397)
Name: NF2272_low_40
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 380
Target Start/End: Original strand, 29662677 - 29663039
Alignment:
| Q |
18 |
tgtgtagtgtgaggtatccactttgcatatcttaatgcgagattaaattccattgcttaacacttacatgctgtttggttgttgaatctccaagttgcat |
117 |
Q |
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| T |
29662677 |
tgtgtagtgtgaggtatccactttgcatatcttaatgcgagattaaattccattgcttaacacttacatgctgtttggttgttgaatctccaagttgcat |
29662776 |
T |
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| Q |
118 |
gatgcataatgtttctttcaacaatgtagttaattacacaatttttgttgaccgctatgtaaaactacagaaaagaattgattgttattatcctagtgga |
217 |
Q |
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| T |
29662777 |
gacgcagaatgtttctttcaacaatgtagttaattacacaatttttgttgaccgccatgtaaaactacagaaaagaattgattgttattatgctagtgga |
29662876 |
T |
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| Q |
218 |
ttatcagacgcttagctaggatttgtttcgtctcctcacttttttatcatcgtaaatttttacctttgttgtcattgaaaattttgcaaatctattagtt |
317 |
Q |
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| T |
29662877 |
ttatcagacgcttagctaggatttgtttcgtctccttgcttttttatcatcgtaaatttttacctgtgttgtcattgaaaattttgcaaatcaataagtt |
29662976 |
T |
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| Q |
318 |
atattgatgatcttagcagggtaatttgttgtggcgaactctatagcttttcctgagaatgtt |
380 |
Q |
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| T |
29662977 |
atattgatgatcttagcagggtaatttgttgtggcgaactctatagcttttcctgagaatgtt |
29663039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 74 - 250
Target Start/End: Complemental strand, 30865444 - 30865268
Alignment:
| Q |
74 |
ttaacacttacatgctgtttggttgttgaatctccaagttgcatgatgcataatgtttctttcaacaatgtagttaattacacaatttttgttgaccgct |
173 |
Q |
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| T |
30865444 |
ttaacacttgtatgttgtttggttgttgaatctccaacttgcatgatgcataatgtttctttcaacaatgcagttaattacataattcttgttgatcgct |
30865345 |
T |
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| Q |
174 |
atgtaaaactacagaaaagaattgattgttattatcctagtggattatcagacgcttagctaggatttgtttcgtct |
250 |
Q |
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|||||||||| || ||||||||||||||| ||||| |||||||||||||| | ||||| ||||||||||| |||||| |
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| T |
30865344 |
atgtaaaactgcataaaagaattgattgtcattatgctagtggattatcaaatgcttaactaggatttgtctcgtct |
30865268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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