View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_low_44 (Length: 389)
Name: NF2272_low_44
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 51 - 268
Target Start/End: Complemental strand, 27446442 - 27446226
Alignment:
| Q |
51 |
agtgggctatagatagtacaaatcagaaaaaaggtgattaagaaagtttgtttgtgaatgtgtgtgagatctttagagcgtgcaaaataatacaatggcc |
150 |
Q |
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| T |
27446442 |
agtgggctatagatagtacaaatcagaaaaaaggtgattaagaaagtttgtttgtgaatgtgtgtgagatctttagagcgtgcaaaataatacaatggcc |
27446343 |
T |
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| Q |
151 |
agacctgttcctccatcaataatcattacatgcctaatgtagaaaaaagaaaaggagattgtgatactttacatttcttatgtttgaaagatttaaatta |
250 |
Q |
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| T |
27446342 |
agacctgttcctccatcaataatcattacatgcctaatgtagaaaaaagaaaaggaaattgtgatattttacatttcttatgtttgaaaga-ttaaatta |
27446244 |
T |
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| Q |
251 |
tattttatcctttaattt |
268 |
Q |
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|||||||||||||||||| |
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| T |
27446243 |
tattttatcctttaattt |
27446226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 266 - 379
Target Start/End: Complemental strand, 27445988 - 27445875
Alignment:
| Q |
266 |
tttggtggagtgtagaagttacacattcactggtatgtatccggtctcatccaaggataatagaatatgaaggtttgccgtctataacaaagaaagtgaa |
365 |
Q |
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| T |
27445988 |
tttggtgaagtgtagaagttacacattcactggtatgtatccggtctcagccaagaataatagaatatgaaggtttgccgtctataacaaagaaagtgaa |
27445889 |
T |
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| Q |
366 |
tctcacatcctttg |
379 |
Q |
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| T |
27445888 |
tctcacatcctttg |
27445875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 266 - 361
Target Start/End: Complemental strand, 46305692 - 46305598
Alignment:
| Q |
266 |
tttggtggagtgtagaagttacacattcactggtatgtatccggtctcatccaaggataatagaatatgaaggtttgccgtctataacaaagaaag |
361 |
Q |
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| T |
46305692 |
tttggtggagtgtagaagt-acacattcattgctatgtatccaatctctcccaaggaagatagagtatgaaggttggccgtctataacaaagaaag |
46305598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Complemental strand, 7079 - 7038
Alignment:
| Q |
266 |
tttggtggagtgtagaagttacacattcactggtatgtatcc |
307 |
Q |
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| T |
7079 |
tttggtgaagtgtagcagctacacattcactggtatgtatcc |
7038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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