View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_low_46 (Length: 382)
Name: NF2272_low_46
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_low_46 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 148 - 370
Target Start/End: Original strand, 10048642 - 10048866
Alignment:
| Q |
148 |
gagggtcaaattctcacgataattcttttttatgaagaattattataacatttggttaataagcaaatatgttggtatatcaataatcgtattagagcta |
247 |
Q |
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| T |
10048642 |
gagggtcaaattctcacgataattcttttttatgaagaattattataacatttggttaataagcaaatatgttggtatatcaataatcgtattggagcta |
10048741 |
T |
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| Q |
248 |
gctaaaaatgtagttattcatgtcattgcatgaattacctcatttgttagtctccgactaaactcaacacgaatttcattaccctctttgtttttcctg- |
346 |
Q |
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| T |
10048742 |
gctaaaaatgtagttattcatgtcattgcatgaattacctcatttgttagtctgcgactaaactcaacacaaattttattaccctctttatttttcctgc |
10048841 |
T |
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| Q |
347 |
-gagcttgactcatcttcctctttc |
370 |
Q |
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| T |
10048842 |
agagcttgactcatcttcctctttc |
10048866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 10048508 - 10048571
Alignment:
| Q |
17 |
attgttcatgaaccttaggtttttagcaagctaattctcatcattttggagggagtagttcatt |
80 |
Q |
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| T |
10048508 |
attgttcatgaaccttaggtttttaacaagctaattctcatcattttggagggagtagttcatt |
10048571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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