View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_low_47 (Length: 370)
Name: NF2272_low_47
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_low_47 |
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| [»] scaffold0685 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 23 - 362
Target Start/End: Original strand, 109090 - 109428
Alignment:
| Q |
23 |
tatagcagaaactttaaatgtggctagtcctacaaatgttgtttaatatccgaaatcataggttaatggttactataaaaatgattcatcattctgtcca |
122 |
Q |
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| T |
109090 |
tatagcagcaactttaaatgtggctagtcctacaaatgttgtttaatatccgaaatcataggttaatggttactataaaa-tgattcatcattctgtcca |
109188 |
T |
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| Q |
123 |
tttctgtatttacatttttctaatatcgtcttcactttgttaactatgttaccaggtgtgcggacgataagccatatgtgcctacatatcagttttccaa |
222 |
Q |
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| T |
109189 |
tttctgtatttacatttttctaatatcgtcttcactttgttaactatgttaccaggtgtgcggacgataagccatatgtgcctacatatcagttttccaa |
109288 |
T |
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| Q |
223 |
agaaaaggcaaagagtttgggaattgaatatactcctttggaagtgagcatcaaggaaactgttgaaagtttgaaagaaaagaagttcgtcaacttttaa |
322 |
Q |
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| T |
109289 |
agaaaaggcaacgagtttgggaattgaatatactcctttggaagtgagcatcaaggaaactgttgaaagtttgaaagaaaagaagttcgtcaacttttaa |
109388 |
T |
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| Q |
323 |
tttgtgatatctccttgtttaggtttttgatgcctatgct |
362 |
Q |
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| T |
109389 |
tttgtgatatctccttgtttaggtttttgatgcctatgct |
109428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 131 - 344
Target Start/End: Original strand, 90400 - 90613
Alignment:
| Q |
131 |
tttacatttttctaatatcgtcttcactttgttaactatgttaccaggtgtgcggacgataagccatatgtgcctacatatcagttttccaaagaaaagg |
230 |
Q |
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| T |
90400 |
tttagatttttctaatatcgttttcactttgtcaactatgttaccaggtgtgcggacgataagccatatgtgcctatatatcaggtttccaaagaaaagg |
90499 |
T |
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| Q |
231 |
caaagagtttgggaattgaatatactcctttggaagtgagcatcaaggaaactgttgaaagtttgaaagaaaagaagttcgtcaacttttaatttgtgat |
330 |
Q |
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| T |
90500 |
cgaaaagcttgggacttgaatatactcctttggaagtgagcatcaaggagactgttgaaagtttgaaagaaaagaagttcgccaacctttaatttgtggt |
90599 |
T |
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| Q |
331 |
atctccttgtttag |
344 |
Q |
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|||||||||||||| |
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| T |
90600 |
atctccttgtttag |
90613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 188 - 334
Target Start/End: Original strand, 2708966 - 2709120
Alignment:
| Q |
188 |
gataagccatatgtgcctacatatcagttttccaaagaaaaggcaaagagtttgggaattgaatatactcctttggaagtgagcatca--------agga |
279 |
Q |
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| T |
2708966 |
gataagccgtacatgcctacatatcaggtttccaaagaaaaggtcaagagcttgggaattgaattaactcttttggaagtcagcatcaaggagagtagga |
2709065 |
T |
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| Q |
280 |
aactgttgaaagtttgaaagaaaagaagttcgtcaacttttaatttgtgatatct |
334 |
Q |
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| T |
2709066 |
gactgtggaaaatttgaaagaaaagaagttcgccaacttttaatttgtgatatct |
2709120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 90330 - 90366
Alignment:
| Q |
103 |
atgattcatcattctgtccatttctgtatttacattt |
139 |
Q |
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| T |
90330 |
atgattcatcattctgtccgtttctgtatttacattt |
90366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 201 - 327
Target Start/End: Original strand, 25936423 - 25936549
Alignment:
| Q |
201 |
tgcctacatatcagttttccaaagaaaaggcaaagagtttgggaattgaatatactcctttggaagtgagcatcaaggaaactgttgaaagtttgaaaga |
300 |
Q |
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| T |
25936423 |
tgccaacatatcagatttctaaggaaaaggctaagagtttgggaatcgagtttacttctttggaagtcaccctcaaggagactgtggaaagcttcagaga |
25936522 |
T |
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| Q |
301 |
aaagaagttcgtcaacttttaatttgt |
327 |
Q |
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| T |
25936523 |
gaaaaagatcgtcaacttttaatttgt |
25936549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 26105073 - 26105151
Alignment:
| Q |
201 |
tgcctacatatcagttttccaaagaaaaggcaaagagtttgggaattgaatatactcctttggaagtgagcatcaagga |
279 |
Q |
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| T |
26105073 |
tgccaacatatcagatttccaaggaaaaggccaagagctttggaatcgagtttactcctttggaaatcagcctcaagga |
26105151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0685 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0685
Description:
Target: scaffold0685; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 332
Target Start/End: Original strand, 5922 - 6089
Alignment:
| Q |
165 |
actatgttaccaggtgtgcggacgataagccatatgtgcctacatatcagttttccaaagaaaaggcaaagagtttgggaattgaatatactcctttgga |
264 |
Q |
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| T |
5922 |
actatgttatcaggtgcgcagacgataagcctttgatgcaaacatttcaggtttccaaagaaaaggcaaagaccttaggagttgaatttattcccctgga |
6021 |
T |
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| Q |
265 |
agtgagcatcaaggaaactgttgaaagtttgaaagaaaagaagttcgtcaacttttaatttgtgatat |
332 |
Q |
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| T |
6022 |
agtgagccttagagagatcgtagaaagtttcaaagataaaaagtttgctaacttctaatttgtgatat |
6089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 332
Target Start/End: Original strand, 29550249 - 29550416
Alignment:
| Q |
165 |
actatgttaccaggtgtgcggacgataagccatatgtgcctacatatcagttttccaaagaaaaggcaaagagtttgggaattgaatatactcctttgga |
264 |
Q |
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||||||||| |||||| || ||||||||||| | ||| |||| |||| ||||||||||||||||||||| || ||| |||||| || ||| |||| |
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| T |
29550249 |
actatgttatcaggtgcgcagacgataagcctttgatgcaaacatttcaggtttccaaagaaaaggcaaagaccttaggagttgaatttattcccctgga |
29550348 |
T |
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| Q |
265 |
agtgagcatcaaggaaactgttgaaagtttgaaagaaaagaagttcgtcaacttttaatttgtgatat |
332 |
Q |
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| T |
29550349 |
agtgagccttagagagatcgtagaaagtttcaaagataaaaagtttgctaacttctaatttgtgatat |
29550416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 29556747 - 29556792
Alignment:
| Q |
206 |
acatatcagttttccaaagaaaaggcaaagagtttgggaattgaat |
251 |
Q |
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| T |
29556747 |
acatttcagatttccaaagaaaaggcaaagacgttgggaattgaat |
29556792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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