View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_low_49 (Length: 367)
Name: NF2272_low_49
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 14 - 348
Target Start/End: Complemental strand, 41687614 - 41687280
Alignment:
| Q |
14 |
agaaggtgtgctgtattttaatcgactcttacatatatctaactccagacttaaaccccctcgtgaacnnnnnnngcagcatgctttattcagtaaaata |
113 |
Q |
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| T |
41687614 |
agaaggtgtgctgtattttaatcgactcttacatatatctaactccagacctaaaccccctcgtgaactttttttgcagcatgctttattcagtaaaata |
41687515 |
T |
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| Q |
114 |
tgtagccaaatagtccccaccgatgtaactttacgaacagattaattcttaaccatcctctcttactacagatgtttgttgaggaagttatgaagcttgt |
213 |
Q |
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| T |
41687514 |
tgtagccaaatagtccccaccgatgtaactttacgaacagattaattcttaaccatcctctcttactacagatgtttgttgaggaagttatgaagcttgt |
41687415 |
T |
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| Q |
214 |
tgagctacaaccagtgaggaattttttagtaggccttcctggcatagatggtttatcaacagaacaaagaaagagactcaccattgctgtagaattggtt |
313 |
Q |
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| T |
41687414 |
tgagctacaaccagtgaggaattttttagtaggccttcctggcatagatggtttatcaacagaacaaagaaagagactcaccattgctgtagaattggtt |
41687315 |
T |
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| Q |
314 |
gccaatccttcaatcatctttatggatgagcctac |
348 |
Q |
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| T |
41687314 |
gccaatccttcaatcatctttatggatgagcctac |
41687280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 182 - 342
Target Start/End: Original strand, 19543085 - 19543245
Alignment:
| Q |
182 |
cagatgtttgttgaggaagttatgaagcttgttgagctacaaccagtgaggaattttttagtaggccttcctggcatagatggtttatcaacagaacaaa |
281 |
Q |
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| T |
19543085 |
cagatgtttatcgaggaagttatagagctagttgagttacatcaagtgagaaatttcttagtcggccttcctggaatagatggattatcaactgagcaga |
19543184 |
T |
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| Q |
282 |
gaaagagactcaccattgctgtagaattggttgccaatccttcaatcatctttatggatga |
342 |
Q |
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| T |
19543185 |
gaaagaggcttaccattgctgtagaattggttgcaaacccttccattatctttatggatga |
19543245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 260 - 342
Target Start/End: Complemental strand, 42171604 - 42171522
Alignment:
| Q |
260 |
gatggtttatcaacagaacaaagaaagagactcaccattgctgtagaattggttgccaatccttcaatcatctttatggatga |
342 |
Q |
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| T |
42171604 |
gatggtctatcaacagaacaaaggaagagacttagtattgctgtggaattggttgctaacccttcaatcatcttcatggatga |
42171522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 260 - 342
Target Start/End: Complemental strand, 42153766 - 42153684
Alignment:
| Q |
260 |
gatggtttatcaacagaacaaagaaagagactcaccattgctgtagaattggttgccaatccttcaatcatctttatggatga |
342 |
Q |
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| T |
42153766 |
gatggtctatcaacagaacaaaggaagaggcttactattgctgtagagcttgttgccaacccttcaatcatcttcatggatga |
42153684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 42132794 - 42132713
Alignment:
| Q |
261 |
atggtttatcaacagaacaaagaaagagactcaccattgctgtagaattggttgccaatccttcaatcatctttatggatga |
342 |
Q |
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|||| ||||||||||||||||| || || || || |||||||| ||||||||||| || |||||||||||||| |||||||| |
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| T |
42132794 |
atggcttatcaacagaacaaaggaaaaggcttactattgctgtggaattggttgctaacccttcaatcatcttcatggatga |
42132713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 342
Target Start/End: Complemental strand, 42141964 - 42141882
Alignment:
| Q |
260 |
gatggtttatcaacagaacaaagaaagagactcaccattgctgtagaattggttgccaatccttcaatcatctttatggatga |
342 |
Q |
| |
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|||||| |||||||||||||||| ||||| || || || ||||| || | |||||||| |||||||||||||| |||||||| |
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| T |
42141964 |
gatggtctatcaacagaacaaaggaagaggcttactatcgctgttgagcttgttgccaacccttcaatcatcttcatggatga |
42141882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 342
Target Start/End: Original strand, 43530610 - 43530770
Alignment:
| Q |
183 |
agatgtttgttgaggaagttatgaagcttgttgagctacaaccagtgaggaattttttagtaggccttcctggcatagatggtttatcaacagaacaaag |
282 |
Q |
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|||||||| | ||||||||||| |||| |||||| || | | || ||| ||||| ||||| ||| ||||||| |||||||| |||||||| || | || |
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| T |
43530610 |
agatgtttatcgaggaagttatagagctagttgagttagatctagcgagaaatttcttagtcggctttcctggaatagatggcttatcaaccgagtagag |
43530709 |
T |
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| Q |
283 |
aaagagactcacca-ttgctgtagaattggttgccaatccttcaatcatctttatggatga |
342 |
Q |
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|||||| | |||| ||||||||||||||||||| || ||||| || ||||||||| |||| |
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| T |
43530710 |
aaagaggtttaccatttgctgtagaattggttgcaaacccttccattatctttatgaatga |
43530770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 345
Target Start/End: Original strand, 4501655 - 4501731
Alignment:
| Q |
269 |
tcaacagaacaaagaaagagactcaccattgctgtagaattggttgccaatccttcaatcatctttatggatgagcc |
345 |
Q |
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| T |
4501655 |
tcaactgaacaaagaaagaggctgacaattgcggtcgagcttgttgctaatccttcaatcatattcatggatgagcc |
4501731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 342
Target Start/End: Complemental strand, 53668720 - 53668683
Alignment:
| Q |
305 |
gaattggttgccaatccttcaatcatctttatggatga |
342 |
Q |
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||||||||||| ||||||||||||||||| |||||||| |
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| T |
53668720 |
gaattggttgctaatccttcaatcatcttcatggatga |
53668683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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