View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2272_low_5 (Length: 783)
Name: NF2272_low_5
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 746; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 746; E-Value: 0
Query Start/End: Original strand, 22 - 767
Target Start/End: Complemental strand, 4709832 - 4709087
Alignment:
| Q |
22 |
aacgcctctcagtttcatctccacgcttttatttttagctgctacattatgtcattgactgatcaaaaaatcttttggctttgataaatatgacagggtc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4709832 |
aacgcctctcagtttcatctccacgcttttatttttagctgctacattatgtcattgactgatcaaaaaatcttttggctttgataaatatgacagggtc |
4709733 |
T |
|
| Q |
122 |
tgatgtccttatcgctgtcatcgtacctcttcttgattaaacctaaaggttgtgggaatgaatcaattcaatgtggaaaacattcaagttgggagatggg |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4709732 |
tgatgtccttatcgctgtcatcgtacctcttcttgattaaacctaaaggttgtgggaatgaatcaattcaatgtggaaaacattcaagttgggagatggg |
4709633 |
T |
|
| Q |
222 |
gatgttctatctctcgatctatctcattgccttggggaatggaggataccaaccgaatattgccacgttcggggctgatcagtttgacgaggagcactca |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4709632 |
gatgttctatctctcgatctatctcattgccttggggaatggaggataccaaccgaatattgccacgttcggggctgatcagtttgacgaggagcactca |
4709533 |
T |
|
| Q |
322 |
aaggagggtcacaataaagtggccttctttagctacttctacctagctttgaactttgggcaactcttttcaaacaccattctcgtctatttcgaggatg |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4709532 |
aaggagggtcacaataaagtggccttctttagctacttctacctagctttgaactttgggcaactcttttcaaacaccattctcgtctatttcgaggatg |
4709433 |
T |
|
| Q |
422 |
aaggaatgtgggctcttggcttctggctgtctgcaggctgtgcctttatcgcactgatactgtttcttgttggcactccaaagtaccgacatttcaagcc |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4709432 |
aaggaatgtgggctcttggcttctggctgtctgcaggctgtgcctttatcgcactgatactgtttcttgttggcactccaaagtaccgacatttcaagcc |
4709333 |
T |
|
| Q |
522 |
cagtggcaaccctcttgccaggttctgccaagtccttgttgctgcatcaaggaaagttaaagttgaaatgccatcaaatggagacgacttgtacaacatg |
621 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4709332 |
cagtggcaaccctcttgccaggttctgccaagtccttgttgctgcatcaaggaaagttaaagttgaaatgccatcaaatggagacgacttgtacaacatg |
4709233 |
T |
|
| Q |
622 |
gatacaaaggagtcttctaccgatgtgaacagaaaaatcctccacacacacgggttcaagtaagtgatagaagctaccttcagctgaaaccacaatactt |
721 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4709232 |
gatacaaaggagtcttctaccgatgtgaacagaaaaatcctccacacacacgggttcaagtaagtgatagaagctaccttcagctgaaaccacaatactt |
4709133 |
T |
|
| Q |
722 |
tcttatgtgcatatagccgaggctgcgagcatgaaacagttctcca |
767 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4709132 |
tcttatgtgcatatagccgaggctgcgagcatgaaacagttctcca |
4709087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 6e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 166 - 686
Target Start/End: Original strand, 40742836 - 40743356
Alignment:
| Q |
166 |
aaaggttgtgggaatgaatcaattcaatgtggaaaacattcaagttgggagatggggatgttctatctctcgatctatctcattgccttggggaatggag |
265 |
Q |
| |
|
||||||||||| |||| | | || ||||||| |||||||||||| ||| ||||| |||||||| || || |||||||| |||||||| || ||||||| |
|
|
| T |
40742836 |
aaaggttgtggaaatggaaaacttgaatgtggggaacattcaagtttggaaatgggaatgttctacctatcaatctatctgattgccttaggaaatggag |
40742935 |
T |
|
| Q |
266 |
gataccaaccgaatattgccacgttcggggctgatcagtttgacgaggagcactcaaaggagggtcacaataaagtggccttctttagctacttctacct |
365 |
Q |
| |
|
| || ||||| || ||||| || || || ||||| || ||||| || || |||||||||||| || | |||||||| || ||||||||||| ||| | |
|
|
| T |
40742936 |
ggtatcaaccaaacattgcaacatttggtgctgaccaatttgatgaagatcactcaaaggagagttattcaaaagtggcattttttagctacttttactt |
40743035 |
T |
|
| Q |
366 |
agctttgaactttgggcaactcttttcaaacaccattctcgtctatttcgaggatgaaggaatgtgggctcttggcttctggctgtctgcaggctgtgcc |
465 |
Q |
| |
|
|| |||||| |||| ||| || |||||||| ||| | | |||||| || ||||||||| | ||||||||||| || ||| ||||| || | |||| |
|
|
| T |
40743036 |
ggcattgaaccttggttcacttttctcaaacactattttgggctattttgaagatgaaggattatgggctcttgggttttgggcttctgctgggtctgcc |
40743135 |
T |
|
| Q |
466 |
tttatcgcactgatactgtttcttgttggcactccaaagtaccgacatttcaagcccagtggcaaccctcttgccaggttctgccaagtccttgttgctg |
565 |
Q |
| |
|
||| | || || |||| |||||||||||||| ||||| || |||| || || || ||||||| |||||| | || ||||||||||| || | |||| |
|
|
| T |
40743136 |
tttttggctcttgtactttttcttgttggcaccccaaaatatagacactttaaaccttgtggcaatcctctttctagattctgccaagtgtttttcgctg |
40743235 |
T |
|
| Q |
566 |
catcaaggaaagttaaagttgaaatgccatcaaatggagacgacttgtacaacatggatacaaaggagtcttctaccgatgtgaacagaaaaatcctcca |
665 |
Q |
| |
|
| ||||||||| | |||| ||||| | ||||||||||| |||||||| ||| ||| |||||||||||||| | | |||||||| || ||||| |
|
|
| T |
40743236 |
cttcaaggaaattgggagttcaaatgacttcaaatggagatgacttgtatgtcatagatgaaaaggagtcttctaacaactccaacagaaagattctcca |
40743335 |
T |
|
| Q |
666 |
cacacacgggttcaagtaagt |
686 |
Q |
| |
|
|||||| || ||||||||||| |
|
|
| T |
40743336 |
cacacatggcttcaagtaagt |
40743356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University