View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_low_50 (Length: 360)
Name: NF2272_low_50
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_low_50 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 360
Target Start/End: Original strand, 35409768 - 35410110
Alignment:
| Q |
18 |
ggttccggccactttgccgaggatggtttcggaaaagcaagctactttcggaaccttgagattgtggacattgataacactcttagctcagtacaaagca |
117 |
Q |
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| T |
35409768 |
ggttccggccactttgccgaggatggtttcggaaaagcaagctactttcggaaccttgagattgtggacattgataacactcttagctcagtacaaagca |
35409867 |
T |
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| Q |
118 |
tctcaaccttggctgaaaatacaaattgttatgatattcaaaactcctatagcaacgaatggggcacatacttctattatggtgggcctgggaataatcc |
217 |
Q |
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| T |
35409868 |
tctcaaccttggctgaaaatacaaattgttatgatattcaaaactcctatagcaacgaatggggcacatacttctattatggtgggcctgggaataatcc |
35409967 |
T |
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| Q |
218 |
taagtgtccatgatttttagttgacgtacatataaattcaattggacacgtatagtttggtttcaaatttgtcccacgtcgaagtaatgtcttctagttt |
317 |
Q |
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| T |
35409968 |
taagtgtccatgatttttagttgacgtacatataaattcaattggacacgtatagtttggtttcaaatttgtcccacgtctaagtaatgtcttctagttc |
35410067 |
T |
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| Q |
318 |
ttgttacattcttttcttgtacgtaattaaagaattatctgtg |
360 |
Q |
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| T |
35410068 |
ttgttacattctttccttgtacgtaattaaagaattatttgtg |
35410110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 48017930 - 48017869
Alignment:
| Q |
18 |
ggttccggccactttgccgaggatggtttcggaaaagcaagctactttcggaaccttgagat |
79 |
Q |
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| T |
48017930 |
ggttccggccactttgctgaagatggctttggaaaagcaagctacttcaggaaccttgagat |
48017869 |
T |
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