View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2272_low_52 (Length: 340)

Name: NF2272_low_52
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2272_low_52
NF2272_low_52
[»] chr6 (11 HSPs)
chr6 (1-340)||(176283-176622)
chr6 (241-340)||(1470926-1471025)
chr6 (224-340)||(7564737-7564853)
chr6 (241-340)||(1459544-1459643)
chr6 (235-338)||(370782-370885)
chr6 (226-328)||(1442096-1442198)
chr6 (75-185)||(1453677-1453787)
chr6 (75-185)||(1465369-1465479)
chr6 (112-185)||(1459403-1459476)
chr6 (241-290)||(9819832-9819881)
chr6 (241-289)||(9703889-9703937)
[»] chr4 (1 HSPs)
chr4 (228-329)||(55419742-55419843)
[»] chr7 (1 HSPs)
chr7 (236-340)||(3927008-3927112)
[»] chr3 (3 HSPs)
chr3 (230-278)||(2442050-2442098)
chr3 (228-285)||(4142124-4142181)
chr3 (233-285)||(4157939-4157991)
[»] chr2 (3 HSPs)
chr2 (235-278)||(6538845-6538888)
chr2 (236-285)||(7160752-7160801)
chr2 (236-285)||(7168688-7168737)
[»] scaffold0044 (1 HSPs)
scaffold0044 (241-295)||(89137-89191)
[»] chr5 (2 HSPs)
chr5 (233-278)||(23766857-23766902)
chr5 (233-278)||(23816705-23816750)


Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 176622 - 176283
Alignment:
Q  1 atatgagactctcaacatagacatcacagttgaaggaactctcaagatagatatttgagttgaaggaaatacatgggaggccttgaatcttgggattctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  176622 atatgagactctcaacatagacatcacagttgaaggaactctcaagatagatatttgagttgaaggaaatacatgggaggccttgaatcttgggattctt 176523  T
Q  101 tactgcaccagtcttgtaattgtaaacatataccttattgttgaagtccacgaacacttggtggtcctcctcagaaatataaagccgagtaatgcagacg 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  176522 tactgcaccagtcttgtaattgtaaacatataccttattgatgaagtacacgaacacttggtggtcctcctcagaaatataaagccgagtaatgcagacg 176423  T
Q  201 ccatcaagaccaacgaattcggcgaatggaagagtgaacgatttagtccaagaatctttatttccataatcgttcatacgccaaatatccaaaaaagttt 300  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  176422 ccatcaagaccaacgaattcggcaaatggaagagtgaacaatttagtccaagaatctttatttccataatcattcatacgccaaatatccaaaaaagttt 176323  T
Q  301 cggtgtgagcaaggacgcataggcaatccctagaaacccc 340  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  176322 cggtgtgagcaaggacgcataggcaatccctagaaacccc 176283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 241 - 340
Target Start/End: Original strand, 1470926 - 1471025
Alignment:
Q  241 atttagtccaagaatctttatttccataatcgttcatacgccaaatatccaaaaaagtttcggtgtgagcaaggacgcataggcaatccctagaaacccc 340  Q
    |||||| |||||||||||||||||||||||| ||||||  ||||||||||||||||| || ||| |||||||||| ||||| | ||||||||||||||||    
T  1470926 atttagaccaagaatctttatttccataatctttcataacccaaatatccaaaaaagatttggtatgagcaaggatgcataagtaatccctagaaacccc 1471025  T

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Target: chr6; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 224 - 340
Target Start/End: Original strand, 7564737 - 7564853
Alignment:
Q  224 gaatggaagagtgaacgatttagtccaagaatctttatttccataatcgttcatacgccaaatatccaaaaaagtttcggtgtgagcaaggacgcatagg 323  Q
    |||||||| | ||||| |||||||||||||||| || ||||||||||| ||||||  |||||||| ||||||||||   |||||||||||||| |||| |    
T  7564737 gaatggaacactgaacaatttagtccaagaatccttgtttccataatccttcataacccaaatattcaaaaaagttgtagtgtgagcaaggacccataag 7564836  T
Q  324 caatccctagaaacccc 340  Q
    ||||||||| |||||||    
T  7564837 caatccctacaaacccc 7564853  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 241 - 340
Target Start/End: Original strand, 1459544 - 1459643
Alignment:
Q  241 atttagtccaagaatctttatttccataatcgttcatacgccaaatatccaaaaaagtttcggtgtgagcaaggacgcataggcaatccctagaaacccc 340  Q
    ||||||||||||| |||||||||||| |||| ||||||  ||||||||||||||||| ||  || |||||||||||||||| | |||||||| |||||||    
T  1459544 atttagtccaagattctttatttccaaaatctttcataacccaaatatccaaaaaagattttgtatgagcaaggacgcataagtaatccctataaacccc 1459643  T

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Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 338
Target Start/End: Original strand, 370782 - 370885
Alignment:
Q  235 tgaacgatttagtccaagaatctttatttccataatcgttcatacgccaaatatccaaaaaagtttcggtgtgagcaaggacgcataggcaatccctaga 334  Q
    ||||| ||||||||||||||||||||||||||||||  ||||||  |||||   ||| ||||||||  || |||||||||| ||||| ||||||||||||    
T  370782 tgaacaatttagtccaagaatctttatttccataattcttcataacccaaacgcccataaaagttttagtctgagcaaggatgcataagcaatccctaga 370881  T
Q  335 aacc 338  Q
    ||||    
T  370882 aacc 370885  T

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Target: chr6; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 226 - 328
Target Start/End: Original strand, 1442096 - 1442198
Alignment:
Q  226 atggaagagtgaacgatttagtccaagaatctttatttccataatcgttcatacgccaaatatccaaaaaagtttcggtgtgagcaaggacgcataggca 325  Q
    |||||| ||||||| |||||||||||||||||||| |||||||||| ||||||  |||  ||||||||| |||| || | |||||||||| ||||| |||    
T  1442096 atggaacagtgaacaatttagtccaagaatctttaattccataatccttcataacccatgtatccaaaatagttccgttttgagcaaggatgcataagca 1442195  T
Q  326 atc 328  Q
    |||    
T  1442196 atc 1442198  T

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Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 185
Target Start/End: Original strand, 1453677 - 1453787
Alignment:
Q  75 gggaggccttgaatcttgggattctttactgcaccagtcttgtaattgtaaacatataccttattgttgaagtccacgaacacttggtggtcctcctcag 174  Q
    ||||||||||||||||| ||| ||||||  | || | |||||||||||||||||||||||| ||  || ||||| | ||||||||||   |||||||| |    
T  1453677 gggaggccttgaatcttaggaatctttagggtacgattcttgtaattgtaaacatatacctcataatttaagtcgaagaacacttggccatcctcctcgg 1453776  T
Q  175 aaatataaagc 185  Q
    |||||||||||    
T  1453777 aaatataaagc 1453787  T

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Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 185
Target Start/End: Original strand, 1465369 - 1465479
Alignment:
Q  75 gggaggccttgaatcttgggattctttactgcaccagtcttgtaattgtaaacatataccttattgttgaagtccacgaacacttggtggtcctcctcag 174  Q
    ||||||||||||||||| ||| ||||||  | || | |||||||||||||||||||||||| ||  || ||||| | ||||||||||   |||||||| |    
T  1465369 gggaggccttgaatcttaggaatctttagggtacgattcttgtaattgtaaacatatacctcataatttaagtcgaagaacacttggccatcctcctcgg 1465468  T
Q  175 aaatataaagc 185  Q
    |||||||||||    
T  1465469 aaatataaagc 1465479  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 185
Target Start/End: Original strand, 1459403 - 1459476
Alignment:
Q  112 tcttgtaattgtaaacatataccttattgttgaagtccacgaacacttggtggtcctcctcagaaatataaagc 185  Q
    ||||||||||||||||||||| |||||| | ||| || | || ||||||||  || ||||||||||||||||||    
T  1459403 tcttgtaattgtaaacatatatcttattatagaaatctaggaccacttggtcatcttcctcagaaatataaagc 1459476  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 290
Target Start/End: Original strand, 9819832 - 9819881
Alignment:
Q  241 atttagtccaagaatctttatttccataatcgttcatacgccaaatatcc 290  Q
    ||||||||||||| ||| |||||||||| || |||||| |||||||||||    
T  9819832 atttagtccaagagtctctatttccatattccttcataagccaaatatcc 9819881  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 9703889 - 9703937
Alignment:
Q  241 atttagtccaagaatctttatttccataatcgttcatacgccaaatatc 289  Q
    ||||||||||| ||||| |||||||||| || |||||| ||||||||||    
T  9703889 atttagtccaaaaatctctatttccatattccttcataagccaaatatc 9703937  T

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Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 228 - 329
Target Start/End: Complemental strand, 55419843 - 55419742
Alignment:
Q  228 ggaagagtgaacgatttagtccaagaatctttatttccataatcgttcatacgccaaatatccaaaaaagtttcggtgtgagcaaggacgcataggcaat 327  Q
    |||| ||| ||| ||||||||||||||||||||||||||||| | |||||| |||| |||||||||||||  | ||||||||||| |||||||| |||||    
T  55419843 ggaatagtaaacaatttagtccaagaatctttatttccataaaccttcataagccagatatccaaaaaagaattggtgtgagcaacgacgcataagcaat 55419744  T
Q  328 cc 329  Q
    ||    
T  55419743 cc 55419742  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 236 - 340
Target Start/End: Complemental strand, 3927112 - 3927008
Alignment:
Q  236 gaacgatttagtccaagaatctttatttccataatcgttcatacgccaaatatccaaaaaagtttcggtgtgagcaaggacgcataggcaatccctagaa 335  Q
    |||| ||||||||||||||| ||||||||||||||| ||||||  ||||||| |||| |||||||| |||| | ||||||| || | ||||||| |||||    
T  3927112 gaacaatttagtccaagaatttttatttccataatccttcataacccaaatacccaacaaagtttcagtgtaaacaaggacacacaagcaatccttagaa 3927013  T
Q  336 acccc 340  Q
    |||||    
T  3927012 acccc 3927008  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 2442098 - 2442050
Alignment:
Q  230 aagagtgaacgatttagtccaagaatctttatttccataatcgttcata 278  Q
    |||||||||| |||||||||||||||||||||||||||| || ||||||    
T  2442098 aagagtgaacaatttagtccaagaatctttatttccatactccttcata 2442050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 4142124 - 4142181
Alignment:
Q  228 ggaagagtgaacgatttagtccaagaatctttatttccataatcgttcatacgccaaa 285  Q
    |||| ||||||| ||||||||||||| |||||||||||||| || |||||| ||||||    
T  4142124 ggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaa 4142181  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 4157939 - 4157991
Alignment:
Q  233 agtgaacgatttagtccaagaatctttatttccataatcgttcatacgccaaa 285  Q
    ||||||| ||||||||||||| |||||||||||||| || |||||| ||||||    
T  4157939 agtgaacaatttagtccaagactctttatttccatattccttcataagccaaa 4157991  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 278
Target Start/End: Complemental strand, 6538888 - 6538845
Alignment:
Q  235 tgaacgatttagtccaagaatctttatttccataatcgttcata 278  Q
    ||||| |||||||||||||||||||||||||||| || ||||||    
T  6538888 tgaacaatttagtccaagaatctttatttccatactccttcata 6538845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 285
Target Start/End: Original strand, 7160752 - 7160801
Alignment:
Q  236 gaacgatttagtccaagaatctttatttccataatcgttcatacgccaaa 285  Q
    |||| |||||||||||||||| ||||||||||| || |||||| ||||||    
T  7160752 gaacaatttagtccaagaatcattatttccatactccttcataagccaaa 7160801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 285
Target Start/End: Original strand, 7168688 - 7168737
Alignment:
Q  236 gaacgatttagtccaagaatctttatttccataatcgttcatacgccaaa 285  Q
    |||| |||||||||||||||| ||||||||||| || |||||| ||||||    
T  7168688 gaacaatttagtccaagaatcgttatttccatattccttcataagccaaa 7168737  T

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Target: scaffold0044 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 295
Target Start/End: Complemental strand, 89191 - 89137
Alignment:
Q  241 atttagtccaagaatctttatttccataatcgttcatacgccaaatatccaaaaa 295  Q
    ||||||||||||| |||||||||||||| || ||||||  ||||||||| |||||    
T  89191 atttagtccaagactctttatttccatattccttcataacccaaatatcaaaaaa 89137  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 23766857 - 23766902
Alignment:
Q  233 agtgaacgatttagtccaagaatctttatttccataatcgttcata 278  Q
    ||||||| ||||||||||||| |||||||||||||| || ||||||    
T  23766857 agtgaacaatttagtccaagactctttatttccatattctttcata 23766902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 23816705 - 23816750
Alignment:
Q  233 agtgaacgatttagtccaagaatctttatttccataatcgttcata 278  Q
    ||||||| ||||||||||||| |||||||||||||| || ||||||    
T  23816705 agtgaacaatttagtccaagactctttatttccatattctttcata 23816750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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