View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_low_54 (Length: 322)
Name: NF2272_low_54
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 45791781 - 45792085
Alignment:
| Q |
1 |
agcactgcctatttttgggttaacctagcatgaagaaagtaaaatctgacaccttggtgtataatttgttttatgtatacatgttattcttccttctgtg |
100 |
Q |
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| T |
45791781 |
agcactgcctatttttgggttaacctagcatgaagaaagtaaaatctgacaccttggtgtataatttgttttatgtatacatgttattcttccttctgtg |
45791880 |
T |
|
| Q |
101 |
ttttacttatctttt--gtcaataggtatttttgaaaactagcctttcacaattcagtttattctttgttgcaggaaatttcaaaattgaggtatgagtt |
198 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45791881 |
ttttacttattttttttgtcaataggtatttttgaaaactagcctttcacaattcagtttattttttgttgcaggaaatttcaaaattgaggtatgagtt |
45791980 |
T |
|
| Q |
199 |
gtgtccactcgtcatgaaagagaggaagttttggagaatatattttatacttgtgaataatcatgttgcaccgtcagtagtttatactattgcttgagta |
298 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||| |
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| T |
45791981 |
gtgtccacatgtcatgaaagagaggaagttttggagaatatattttatacttgtgaataatcatatcgcaccgtaagtagtttatactattgcttgagta |
45792080 |
T |
|
| Q |
299 |
ttttg |
303 |
Q |
| |
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||||| |
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| T |
45792081 |
ttttg |
45792085 |
T |
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