View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_low_55 (Length: 321)
Name: NF2272_low_55
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 33702616 - 33702312
Alignment:
| Q |
1 |
agctttacgttttttactaaaaggaaagagaaattaacataataaatagcatactactatttgttattnnnnnnnntatatagcatccaccaactaaact |
100 |
Q |
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| T |
33702616 |
agcttgacgttttttactaaaaggaaagagaaatgaacataataaataacata--ac-atttgttattaaaaaaaatatatagcgtccaccaactaaact |
33702520 |
T |
|
| Q |
101 |
tacatcatctattatagagtaataataatatttgttgaggctaagggaactcgtgggtttgtttcccacatactgttaatattccattccaactcaacta |
200 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
33702519 |
tacatcatctatcatagagtaaaaataatatttgttgaggctaagggaactcgtaggtttgtttcgcacataatgttaatattccattccaactcaacta |
33702420 |
T |
|
| Q |
201 |
tacttcgcagttcacattaccttttgaggtattgtgtgtaatgagatcaaccccttcatgatttctttctttataaaaaggtgtctcgttcgatttagga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||| ||||||| |||||||||||||||||||| |
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| T |
33702419 |
tacttcgcagttcacattaccttttgaggtattgtgtgtaatgagtgcaaccccttcctggtttctttcttcataaaaatgtgtctcgttcgatttagga |
33702320 |
T |
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| Q |
301 |
gtgtgagt |
308 |
Q |
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|||||||| |
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| T |
33702319 |
gtgtgagt |
33702312 |
T |
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