View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2272_low_56 (Length: 321)

Name: NF2272_low_56
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2272_low_56
NF2272_low_56
[»] chr5 (6 HSPs)
chr5 (2-321)||(1485456-1485777)
chr5 (26-164)||(1504398-1504534)
chr5 (12-166)||(1491620-1491772)
chr5 (12-165)||(1481730-1481881)
chr5 (12-172)||(1477619-1477777)
chr5 (48-165)||(1496866-1496981)
[»] chr2 (1 HSPs)
chr2 (12-172)||(24165431-24165589)
[»] chr7 (5 HSPs)
chr7 (12-170)||(5283893-5284049)
chr7 (12-170)||(5290078-5290234)
chr7 (12-170)||(5302081-5302237)
chr7 (36-170)||(5309742-5309874)
chr7 (26-170)||(5314549-5314691)
[»] chr1 (3 HSPs)
chr1 (12-167)||(44128198-44128351)
chr1 (12-167)||(44132403-44132556)
chr1 (12-167)||(44140825-44140978)
[»] chr3 (1 HSPs)
chr3 (107-163)||(39029635-39029691)


Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 2 - 321
Target Start/End: Original strand, 1485456 - 1485777
Alignment:
Q  2 atcatagggcagggcaaaaggccttgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcagatattctgatttctatact 101  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  1485456 atcatagggcagggcagaaggccctgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcacatatcctgatttctatact 1485555  T
Q  102 ttagaatcacaaatagcgagcacaagacgcaactcaaagagaaatttcagcgcatttgtaagtattcttttaatctattagtattatatttagatacttt 201  Q
    | |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1485556 tcagaatcgcaaatagcgagcacaagacgcaactcagagagaaatttcagcgcatttgtaagtattcttttaatctattagtattatttttagatacttt 1485655  T
Q  202 ccattaacatttattttcgatctctagtattcttttaatctctagttaaaatc--tatgaataggcaaaaccatttctgaatttgtaagatgttgatcaa 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  1485656 ccattaacatttattttcgatctctagtattcttttaatctctagttaaaatctatatgaataggcaaaaccatttctgaatttgtaagatgttgatcaa 1485755  T
Q  300 tatatatattttgttaagcttt 321  Q
    ||||||||||||||||||||||    
T  1485756 tatatatattttgttaagcttt 1485777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 26 - 164
Target Start/End: Original strand, 1504398 - 1504534
Alignment:
Q  26 tgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcagatattctgatttctatactttagaatcacaaatagcgagcaca 125  Q
    ||||| ||| |||||||| || |||||||||||||||||||||||||||||||||| |||| ||||||||  ||||||||||||||||| || || ||||    
T  1504398 tgcaaccattttggccattggcactgcaaatccaccaaattgtgttgaacaaagcacatatcctgatttc--tactttagaatcacaaacagtgaacaca 1504495  T
Q  126 agacgcaactcaaagagaaatttcagcgcatttgtaagt 164  Q
    | ||  ||||||||||||||||||| ||||| |||||||    
T  1504496 aaactgaactcaaagagaaatttcaacgcatgtgtaagt 1504534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 166
Target Start/End: Original strand, 1491620 - 1491772
Alignment:
Q  12 agggcaaaaggccttgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcagatattctgatttctatactttagaatcac 111  Q
    |||||| |||| | ||||| ||| |||||||| || |||||||||||| |||| |||||||||||||||| |||| ||||||  | ||||||| ||||||    
T  1491620 agggcagaaggtcctgcaaccatattggccattggcactgcaaatccagcaaactgtgttgaacaaagcacatatcctgatt--tttactttaaaatcac 1491717  T
Q  112 aaatagcgagcacaagacgcaactcaaagagaaatttcagcgcatttgtaagtat 166  Q
    ||||||||| ||||| ||  | |||||||| |||||||| ||||| |||||||||    
T  1491718 aaatagcgaacacaaaactgagctcaaagaaaaatttcaacgcatgtgtaagtat 1491772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 165
Target Start/End: Original strand, 1481730 - 1481881
Alignment:
Q  12 agggcaaaaggccttgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcagatattctgatttctatactttagaatcac 111  Q
    |||||| |||| | ||||| ||| |||||||| || |||||||||||| |||| |||||||||||||||| |||| ||||||  | ||||||| ||||||    
T  1481730 agggcagaaggtcctgcaaccatattggccattggcactgcaaatccagcaaactgtgttgaacaaagcacatatcctgatt--tttactttaaaatcac 1481827  T
Q  112 aaatagcgagca-caagacgcaactcaaagagaaatttcagcgcatttgtaagta 165  Q
    ||| || |||||  ||| || |||||||||| |||||||| ||||| ||||||||    
T  1481828 aaacagtgagcataaagtcg-aactcaaagaaaaatttcaacgcatgtgtaagta 1481881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 172
Target Start/End: Original strand, 1477619 - 1477777
Alignment:
Q  12 agggcaaaaggccttgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcagatattctgatttctatactttagaatcac 111  Q
    |||||| |||||| ||| | |||| ||||||| || |||||||||||| | || |||||||||||||||| |||| ||||||  | ||||| | ||||||    
T  1477619 agggcagaaggccctgccaccatcatggccattggcactgcaaatccagccaactgtgttgaacaaagcacatatcctgatt--tttacttcaaaatcac 1477716  T
Q  112 aaatagcgagcacaagacgcaactcaaagagaaatttcagcgcatttgtaagtattctttt 172  Q
    ||| || ||||||||     |||| ||||| |||||||| ||||| |||||||||||||||    
T  1477717 aaacagtgagcacaaagttgaacttaaagaaaaatttcaacgcatgtgtaagtattctttt 1477777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 165
Target Start/End: Original strand, 1496866 - 1496981
Alignment:
Q  48 actgcaaatccaccaaattgtgttgaacaaagcagatattctgatttctatactttagaatcacaaatagcgagcacaagacgcaactcaaagagaaatt 147  Q
    |||||||||||| |||||||| |||||||||||| |||| ||||| |||||  || ||| ||||||| |  |||||||||||  || | ||| |||||||    
T  1496866 actgcaaatccaacaaattgtattgaacaaagcacatatcctgatctctat--ttcagagtcacaaacaatgagcacaagactgaattaaaaaagaaatt 1496963  T
Q  148 tcagcgcatttgtaagta 165  Q
     |||||||| ||| ||||    
T  1496964 ccagcgcatatgttagta 1496981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 172
Target Start/End: Complemental strand, 24165589 - 24165431
Alignment:
Q  12 agggcaaaaggccttgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcagatattctgatttctatactttagaatcac 111  Q
    |||||| |||||| |||||  ||||||||||| || ||||||||||||||||| |||||||||||||||| |||| ||||||||  ||||||||| ||||    
T  24165589 agggcagaaggccctgcaactatcttggccattggcactgcaaatccaccaaactgtgttgaacaaagcacatatcctgatttc--tactttagagtcac 24165492  T
Q  112 aaatagcgagcacaagacgcaactcaaagagaaatttcagcgcatttgtaagtattctttt 172  Q
    ||| |||||||||||||   |||||||||| |||||||| |||||||||||||||| ||||    
T  24165491 aaacagcgagcacaagatcaaactcaaagaaaaatttcaacgcatttgtaagtattatttt 24165431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 12 - 170
Target Start/End: Original strand, 5283893 - 5284049
Alignment:
Q  12 agggcaaaaggccttgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcagatattctgatttctatactttagaatcac 111  Q
    |||||| |||||| ||||| |||||||||||| || |||||||||||| |||||||||||||||||||||  ||| ||||||  | ||||||| ||||||    
T  5283893 agggcagaaggccctgcaaccatcttggccattgggactgcaaatccagcaaattgtgttgaacaaagcacgtatcctgatt--tttactttaaaatcac 5283990  T
Q  112 aaatagcgagcacaagacgcaactcaaagagaaatttcagcgcatttgtaagtattctt 170  Q
    ||| || || ||||| ||  |||| |||||||||||||||||||| |||||||||||||    
T  5283991 aaacagtgaacacaaaactgaacttaaagagaaatttcagcgcatgtgtaagtattctt 5284049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 170
Target Start/End: Complemental strand, 5290234 - 5290078
Alignment:
Q  12 agggcaaaaggccttgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcagatattctgatttctatactttagaatcac 111  Q
    |||||| |||| | |||||  ||||| ||||| || |||||||||||| |||||||||||||||||||||  ||| ||||||| ||  ||||| ||| ||    
T  5290234 agggcagaaggtcctgcaactatcttagccattggcactgcaaatccagcaaattgtgttgaacaaagcacttatcctgattttta--ctttaaaattac 5290137  T
Q  112 aaatagcgagcacaagacgcaactcaaagagaaatttcagcgcatttgtaagtattctt 170  Q
    |||||| || ||||| ||  ||||||||||||||||||||||||| |||||||||||||    
T  5290136 aaatagtgaacacaaaactgaactcaaagagaaatttcagcgcatgtgtaagtattctt 5290078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 170
Target Start/End: Original strand, 5302081 - 5302237
Alignment:
Q  12 agggcaaaaggccttgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcagatattctgatttctatactttagaatcac 111  Q
    |||||| |||| | |||||  ||||| ||||| || |||||||||||| |||||||||||||||||||||  ||| ||||||| ||  ||||| ||| ||    
T  5302081 agggcagaaggtcctgcaactatcttagccattggcactgcaaatccagcaaattgtgttgaacaaagcacttatcctgattttta--ctttaaaattac 5302178  T
Q  112 aaatagcgagcacaagacgcaactcaaagagaaatttcagcgcatttgtaagtattctt 170  Q
    |||||| || ||||| ||  ||||||||||||||||||||||||| |||||||||||||    
T  5302179 aaatagtgaacacaaaactgaactcaaagagaaatttcagcgcatgtgtaagtattctt 5302237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 36 - 170
Target Start/End: Original strand, 5309742 - 5309874
Alignment:
Q  36 ttggccataggaactgcaaatccaccaaattgtgttgaacaaagcagatattctgatttctatactttagaatcacaaatagcgagcacaagacgcaact 135  Q
    |||||||| || |||||||||||| ||||||||||||||||||||| |||| ||||||  | ||||||| |||||||||||| || ||||| ||  ||||    
T  5309742 ttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacatatcctgatt--tttactttaaaatcacaaatagtgaacacaaaactgaact 5309839  T
Q  136 caaagagaaatttcagcgcatttgtaagtattctt 170  Q
     || ||||||||||||||||| |||||||||||||    
T  5309840 taaggagaaatttcagcgcatgtgtaagtattctt 5309874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 26 - 170
Target Start/End: Original strand, 5314549 - 5314691
Alignment:
Q  26 tgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcagatattctgatttctatactttagaatcacaaatagcgagcaca 125  Q
    ||||| ||| |||||||| || |||||||||||| ||||||||||||||||||||| |||| ||||||  | ||||||| ||| |||||||| || ||||    
T  5314549 tgcaaccattttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacatatcctgatt--tttactttaaaattacaaatagtgaacaca 5314646  T
Q  126 agacgcaactcaaagagaaatttcagcgcatttgtaagtattctt 170  Q
    |     ||||||||||||||||||||||||| |||||||||||||    
T  5314647 aagttgaactcaaagagaaatttcagcgcatgtgtaagtattctt 5314691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 12 - 167
Target Start/End: Original strand, 44128198 - 44128351
Alignment:
Q  12 agggcaaaaggccttgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcagatattctgatttctatactttagaatcac 111  Q
    |||||| |||||| ||||| ||| || ||||| || |||||||| ||| | ||||||||||||||||||| |||| ||||||||  ||||| | ||||||    
T  44128198 agggcagaaggccctgcaaccattttagccattggcactgcaaacccagccaattgtgttgaacaaagcacatatcctgatttc--tacttcaaaatcac 44128295  T
Q  112 aaatagcgagcacaagacgcaactcaaagagaaatttcagcgcatttgtaagtatt 167  Q
    |||||| || ||||||||  |||||||||||||||| || ||||| ||||||||||    
T  44128296 aaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtatt 44128351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 12 - 167
Target Start/End: Original strand, 44132403 - 44132556
Alignment:
Q  12 agggcaaaaggccttgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcagatattctgatttctatactttagaatcac 111  Q
    |||||| |||||| ||||| ||| || ||||| || |||||||| ||| | ||||||||||||||||||| |||| ||||||||  ||||| | ||||||    
T  44132403 agggcagaaggccctgcaaccattttagccattggcactgcaaacccagccaattgtgttgaacaaagcacatatcctgatttc--tacttcaaaatcac 44132500  T
Q  112 aaatagcgagcacaagacgcaactcaaagagaaatttcagcgcatttgtaagtatt 167  Q
    |||||| || ||||||||  |||||||||||||||| || ||||| ||||||||||    
T  44132501 aaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtatt 44132556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 12 - 167
Target Start/End: Original strand, 44140825 - 44140978
Alignment:
Q  12 agggcaaaaggccttgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcagatattctgatttctatactttagaatcac 111  Q
    |||||| |||||| ||||| ||| || ||||| || |||||||| ||| | ||||||||||||||||||| |||| ||||||||  ||||| | ||||||    
T  44140825 agggcagaaggccctgcaaccattttagccattggcactgcaaacccagccaattgtgttgaacaaagcacatatcctgatttc--tacttcaaaatcac 44140922  T
Q  112 aaatagcgagcacaagacgcaactcaaagagaaatttcagcgcatttgtaagtatt 167  Q
    |||||| || ||||||||  |||||||||||||||| || ||||| ||||||||||    
T  44140923 aaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtatt 44140978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 39029635 - 39029691
Alignment:
Q  107 atcacaaatagcgagcacaagacgcaactcaaagagaaatttcagcgcatttgtaag 163  Q
    ||||||||||| |||||||||||  | || ||||| |||||||||||||| ||||||    
T  39029635 atcacaaatagtgagcacaagacagagctgaaagaaaaatttcagcgcatgtgtaag 39029691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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