View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2272_low_65 (Length: 300)

Name: NF2272_low_65
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2272_low_65
NF2272_low_65
[»] chr1 (11 HSPs)
chr1 (159-241)||(194668-194750)
chr1 (13-77)||(52280562-52280626)
chr1 (159-240)||(45811261-45811342)
chr1 (159-240)||(45810723-45810804)
chr1 (192-240)||(43737978-43738026)
chr1 (159-210)||(30780951-30781002)
chr1 (191-240)||(8560839-8560888)
chr1 (192-240)||(9947995-9948043)
chr1 (192-240)||(16270207-16270255)
chr1 (192-240)||(23440865-23440913)
chr1 (192-240)||(51974437-51974485)
[»] chr6 (8 HSPs)
chr6 (159-240)||(14337524-14337605)
chr6 (159-240)||(7158435-7158516)
chr6 (159-240)||(7159308-7159389)
chr6 (13-77)||(14337378-14337442)
chr6 (159-240)||(14336616-14336694)
chr6 (192-240)||(7193338-7193386)
chr6 (192-240)||(33018167-33018215)
chr6 (192-240)||(33480628-33480676)
[»] chr5 (16 HSPs)
chr5 (159-240)||(26688166-26688247)
chr5 (159-240)||(26957897-26957978)
chr5 (159-240)||(7625473-7625554)
chr5 (159-240)||(26688708-26688789)
chr5 (159-240)||(26958439-26958520)
chr5 (162-240)||(14553667-14553745)
chr5 (159-240)||(7625990-7626071)
chr5 (13-77)||(7625635-7625699)
chr5 (162-238)||(14553941-14554017)
chr5 (187-240)||(8040439-8040492)
chr5 (190-240)||(16971031-16971081)
chr5 (192-240)||(15183088-15183137)
chr5 (192-241)||(15184017-15184066)
chr5 (192-240)||(8040195-8040243)
chr5 (192-240)||(8204120-8204168)
chr5 (192-240)||(31148445-31148493)
[»] chr7 (9 HSPs)
chr7 (159-241)||(41195333-41195415)
chr7 (192-241)||(17145621-17145670)
chr7 (192-241)||(37469005-37469054)
chr7 (187-240)||(41194513-41194566)
chr7 (192-240)||(668179-668227)
chr7 (192-240)||(37468910-37468958)
chr7 (192-240)||(38071898-38071946)
chr7 (192-240)||(38778854-38778902)
chr7 (192-240)||(38779563-38779611)
[»] chr8 (12 HSPs)
chr8 (159-240)||(42346527-42346608)
chr8 (159-239)||(28090658-28090738)
chr8 (159-240)||(42345166-42345247)
chr8 (159-240)||(44834708-44834789)
chr8 (159-240)||(44835396-44835477)
chr8 (159-226)||(28091344-28091411)
chr8 (170-240)||(36936396-36936466)
chr8 (170-240)||(36936675-36936745)
chr8 (170-240)||(30272934-30273004)
chr8 (192-241)||(26778523-26778571)
chr8 (192-240)||(25876521-25876569)
chr8 (192-240)||(41859310-41859358)
[»] chr4 (11 HSPs)
chr4 (159-240)||(30478309-30478390)
chr4 (159-240)||(48013317-48013398)
chr4 (159-240)||(48013860-48013941)
chr4 (159-238)||(30478851-30478930)
chr4 (159-240)||(46707394-46707475)
chr4 (159-240)||(46707979-46708060)
chr4 (159-233)||(7907569-7907643)
chr4 (194-239)||(53600180-53600225)
chr4 (192-240)||(11417687-11417735)
chr4 (192-240)||(21166375-21166423)
chr4 (192-240)||(29651332-29651380)
[»] chr2 (13 HSPs)
chr2 (159-240)||(4478851-4478932)
chr2 (159-239)||(16649705-16649785)
chr2 (159-240)||(19521884-19521965)
chr2 (159-240)||(37157522-37157603)
chr2 (159-239)||(19521342-19521422)
chr2 (159-241)||(16650453-16650532)
chr2 (159-240)||(37543258-37543339)
chr2 (159-240)||(37158210-37158286)
chr2 (192-240)||(37547998-37548046)
chr2 (192-240)||(21471017-21471065)
chr2 (192-240)||(21471954-21472002)
chr2 (192-240)||(24727821-24727869)
chr2 (192-240)||(37720038-37720086)
[»] chr3 (13 HSPs)
chr3 (159-240)||(25329383-25329464)
chr3 (163-240)||(30847824-30847901)
chr3 (159-240)||(43638045-43638126)
chr3 (159-235)||(25329925-25330001)
chr3 (159-239)||(42179099-42179179)
chr3 (159-235)||(42179959-42180035)
chr3 (159-229)||(30847206-30847276)
chr3 (192-238)||(32994927-32994973)
chr3 (192-240)||(19132812-19132860)
chr3 (193-240)||(31556217-31556264)
chr3 (159-200)||(43637456-43637497)
chr3 (192-240)||(36750437-36750485)
chr3 (192-240)||(49749125-49749173)
[»] scaffold0041 (1 HSPs)
scaffold0041 (192-241)||(27220-27269)
[»] scaffold0129 (1 HSPs)
scaffold0129 (159-210)||(43185-43236)
[»] scaffold0311 (1 HSPs)
scaffold0311 (192-240)||(160-208)


Alignment Details
Target: chr1 (Bit Score: 67; Significance: 9e-30; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 194668 - 194750
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcaccg 241  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  194668 caatgttcctcttgaatctaatggttgagatttactttcccatgatgggaaagaagtttgctttcccaaattaaatggcaccg 194750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 52280562 - 52280626
Alignment:
Q  13 aatattcatgggcttcagtttcaacctaccagttgttttttactacccgcagatttaacagggtg 77  Q
    ||||||||||| ||  |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  52280562 aatattcatggtctctagtttcaacctatcagttgttttttactacccgcagatttaacagggtg 52280626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 45811261 - 45811342
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||| ||||| |||||| ||| ||||||||||||||||||||||||| |||||||  ||| ||||||||||||||| |||||    
T  45811261 caatattcctcttgaatttaatggttgagatttactttcccatgatgagaaagaagtttgttttcccaaattaaatagcacc 45811342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 45810804 - 45810723
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||||||||| |||||||||| |||||||||||||||| |||| ||   ||| ||| ||  |||| ||||||||||||||||    
T  45810804 caatgttcctcttgaatctaatggttgagatttacttttccataataaaaaaaaaaattattttctcaaattaaatggcacc 45810723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 43737978 - 43738026
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||||||||||||||||||||   | ||||||||||||||||||||||    
T  43737978 actttcccatgatgggaaagaactctcctttcccaaattaaatggcacc 43738026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 210
Target Start/End: Original strand, 30780951 - 30781002
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaa 210  Q
    ||||||||||||| ||||||| |||  | |||||||||||||||||||||||    
T  30780951 caatgttcctttttaatctaacggtaaacatttactttcccatgatgggaaa 30781002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 8560888 - 8560839
Alignment:
Q  191 tactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||||||||||||||||||||||   | ||||||||||||||||| ||||    
T  8560888 tactttcccatgatgggaaagaagtctcctttcccaaattaaatgtcacc 8560839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 9948043 - 9947995
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||| ||||| ||||||||||  || ||||||||||||||||||||||    
T  9948043 acttttccatggtgggaaagaacttttctttcccaaattaaatggcacc 9947995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 16270255 - 16270207
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||||||||| ||||||||||   | ||||||||||||||||||||||    
T  16270255 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 16270207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 23440865 - 23440913
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||||||||| ||||||||||   | ||||||||||||||||||||||    
T  23440865 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 23440913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 51974485 - 51974437
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||||||||| ||||||||||   | ||||||||||||||||||||||    
T  51974485 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 51974437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 14337524 - 14337605
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  14337524 caatgttcctcttgaatctaatggttgagatttactttcccatgatgggaaagaagtttgctttcccaaattaaatggcacc 14337605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 7158516 - 7158435
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||    
T  7158516 caatgttcctcttgaatctaatggttgagatttactttcccatgatgggaatgaagtttgctttcccaaattaaatggcacc 7158435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 7159308 - 7159389
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||    
T  7159308 caatgttcctcttgaatctaatggttgagatttactttcccatgatgggaaaaaagtttgctttcccaaattaaatggcacc 7159389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 14337378 - 14337442
Alignment:
Q  13 aatattcatgggcttcagtttcaacctaccagttgttttttactacccgcagatttaacagggtg 77  Q
    ||||||||||| || ||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  14337378 aatattcatggtctccagtttcaacctaccagatgttttttactacctgcagatttaacagggtg 14337442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 14336694 - 14336616
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||||||||| |||||| ||| ||||||||||||||||| |||||   |||||||| || ||||  ||||||||||||||||    
T  14336694 caatgttcctcttgaatttaatggttgagatttactttctcatga---gaaagaaattttctttatcaaattaaatggcacc 14336616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 7193386 - 7193338
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||||||||| ||||||||||   | ||||||||||||||||||||||    
T  7193386 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 7193338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 33018215 - 33018167
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||||| ||||||||||||||   | ||||||||||||||||||||||    
T  33018215 actttccaatgatgggaaagaactctcctttcccaaattaaatggcacc 33018167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 33480628 - 33480676
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||||||||| ||||||||||   | ||||||||||||||||||||||    
T  33480628 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 33480676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 26688247 - 26688166
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  26688247 caatgttcctcttgaatctaatggttgagatttactttcccatgatgggaaagaagtttgctttcccaaattaaatggcacc 26688166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 26957978 - 26957897
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  26957978 caatgttcctcttgaatctaatggttgagatttactttcccatgatgggaaagaagtttgctttcccaaattaaatggcacc 26957897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 7625554 - 7625473
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||||||||| |||||| ||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||    
T  7625554 caatgttcctcttgaatttaatggttgagatttactttcccatgatgggaaagaagtttgctttcccaaattaaatgacacc 7625473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 26688708 - 26688789
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||||  ||||||| |||||||||||| ||||    
T  26688708 caatgttcctcttgaatctaatggttgagatttactttcccatgatgggaaagaagtttgcttttccaaattaaatgtcacc 26688789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 26958439 - 26958520
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||||  ||||||| |||||||||||| ||||    
T  26958439 caatgttcctcttgaatctaatggttgagatttactttcccatgatgggaaagaagtttgcttttccaaattaaatgtcacc 26958520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 14553745 - 14553667
Alignment:
Q  162 tgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||||| || ||||||| |||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||    
T  14553745 tgttcctcttaaatctaatggttgagatttactttcccatgatggaaaagaagtttgctttcccaaattaaatggcacc 14553667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 7625990 - 7626071
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||||||||| |||||| ||| | |||||||||||||||||||||||||||||||  ||||||| |||||||||||| ||||    
T  7625990 caatgttcctcttgaatataatgattgagatttactttcccatgatgggaaagaagtttgcttttccaaattaaatgacacc 7626071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 7625699 - 7625635
Alignment:
Q  13 aatattcatgggcttcagtttcaacctaccagttgttttttactacccgcagatttaacagggtg 77  Q
    ||||||||||| || ||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  7625699 aatattcatggtctccagtttcaacctatcagttgttttttactacccgcagatttgacagggtg 7625635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 14553941 - 14554017
Alignment:
Q  162 tgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggca 238  Q
    ||||||| || ||||||| ||||||||||||||||||||| || | ||| ||  || ||||||||||||||||||||    
T  14553941 tgttcctcttaaatctaatggttgagatttactttcccataatagtaaataagtttactttcccaaattaaatggca 14554017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 8040439 - 8040492
Alignment:
Q  187 gatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||| ||||||||| | ||||||||||| || ||||||||||||||||||||||    
T  8040439 gattaactttcccacggtgggaaagaaatttcctttcccaaattaaatggcacc 8040492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 16971031 - 16971081
Alignment:
Q  190 ttactttcccatgatgggaaagaaacttg-ctttcccaaattaaatggcacc 240  Q
    ||||||||||||||||||||| ||||| | ||||||||||||||||||||||    
T  16971031 ttactttcccatgatgggaaa-aaactagtctttcccaaattaaatggcacc 16971081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 15183137 - 15183088
Alignment:
Q  192 actttcccatgatgggaaagaaact-tgctttcccaaattaaatggcacc 240  Q
    |||||| |||||||||||| ||||| | ||||||||||||||||||||||    
T  15183137 actttctcatgatgggaaataaactctcctttcccaaattaaatggcacc 15183088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 15184017 - 15184066
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcaccg 241  Q
    ||||||||||| ||||||||||   | |||||||||||||||||||||||    
T  15184017 actttcccatggtgggaaagaactctcctttcccaaattaaatggcaccg 15184066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 8040243 - 8040195
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||||||| ||||||||||||   | ||||||||||||||||||||||    
T  8040243 actttcccacgatgggaaagaactgtcctttcccaaattaaatggcacc 8040195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 8204168 - 8204120
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||||||||| ||||||||||   | ||||||||||||||||||||||    
T  8204168 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 8204120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 31148445 - 31148493
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||||||||||||||||| ||   ||||||||||||||||| ||||||    
T  31148445 actttcccatgatgggaaaaaagtgtgctttcccaaattaaacggcacc 31148493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 41195333 - 41195415
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcaccg 241  Q
    |||||||||| |||||||||| |||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||    
T  41195333 caatgttcctcttgaatctaatggttgagatttacttttccatgatgggaaagaagtttgctttcccaaattaaatggcaccg 41195415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 17145670 - 17145621
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcaccg 241  Q
    ||||||||||| ||||||||||   | |||||||||||||||||||||||    
T  17145670 actttcccatggtgggaaagaactctcctttcccaaattaaatggcaccg 17145621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 37469005 - 37469054
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcaccg 241  Q
    ||||||||||| ||||||||||   | |||||||||||||||||||||||    
T  37469005 actttcccatggtgggaaagaactctcctttcccaaattaaatggcaccg 37469054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 41194566 - 41194513
Alignment:
Q  187 gatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||| ||||||||||| ||||||||||   | ||||||||||||||||||||||    
T  41194566 gattaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 41194513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 668227 - 668179
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||||||||| ||||||||||   | ||||||||||||||||||||||    
T  668227 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 668179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 37468958 - 37468910
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||||||||| ||||||||||   | ||||||||||||||||||||||    
T  37468958 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 37468910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 38071946 - 38071898
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||||||||||||||||||||   | |||||| |||||||||||||||    
T  38071946 actttcccatgatgggaaagaactctcctttcctaaattaaatggcacc 38071898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 38778902 - 38778854
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||||||||| ||||||||||   | ||||||||||||||||||||||    
T  38778902 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 38778854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 38779563 - 38779611
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||||||||| ||||||||||   | ||||||||||||||||||||||    
T  38779563 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 38779611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 42346527 - 42346608
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||    
T  42346527 caatgttcctcttgaatctaatggttgagatttactttcccatgatggaaaagaagtttgctttcccaaattaaatggcacc 42346608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 28090738 - 28090658
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcac 239  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||||  || |||||||||||||||||||||    
T  28090738 caatgttcctcttgaatctaatggttgagatttactttcccatgatgggaaagaagtttactttcccaaattaaatggcac 28090658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 42345247 - 42345166
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||||||||| |||||||||| | |||||||||||||||||||||||||||||||  || ||||||||||||||||||||||    
T  42345247 caatgttcctcttgaatctaatgattgagatttactttcccatgatgggaaagaagtttactttcccaaattaaatggcacc 42345166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 44834789 - 44834708
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||||||||| |||||||||| |||||||||||||||||||||||| |||| |||  ||| |||||||||||||||| ||||    
T  44834789 caatgttcctcttgaatctaatggttgagatttactttcccatgataggaaggaagtttgttttcccaaattaaatgacacc 44834708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 44835396 - 44835477
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||||| || || ||| ||| |||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||    
T  44835396 caatgtttctcttaaatttaatggttgagatttactttcccatgatgggaaagaagtttgcttttccaaattaaatggcacc 44835477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 28091344 - 28091411
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttccca 226  Q
    |||||||||| |||||||||| |||||||||||||||||| ||||||||||||||  |||||||||||    
T  28091344 caatgttcctcttgaatctaatggttgagatttactttcctatgatgggaaagaagtttgctttccca 28091411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 36936396 - 36936466
Alignment:
Q  170 ttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||||||||| |||| | ||||||||||||||||||||||| ||  |||||||||||||||||| ||||||    
T  36936396 ttgaatctaatggttaaaatttactttcccatgatgggaaaaaagtttgctttcccaaattaaacggcacc 36936466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 36936675 - 36936745
Alignment:
Q  170 ttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||||||||| |||| | ||||||||||||||||||||||| ||  |||||||||||||||||| ||||||    
T  36936675 ttgaatctaatggttaaaatttactttcccatgatgggaaaaaagtttgctttcccaaattaaacggcacc 36936745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 30272934 - 30273004
Alignment:
Q  170 ttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||||||||| |||| | | ||||||||||||||||||||| ||  |||||||||||||||||| ||||||    
T  30272934 ttgaatctaatggttaaaacttactttcccatgatgggaaaaaagtttgctttcccaaattaaacggcacc 30273004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 26778523 - 26778571
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcaccg 241  Q
    |||||| |||||||||||||||  ||||||||||||||| ||||||||||    
T  26778523 actttctcatgatgggaaagaagtttgctttcccaaatt-aatggcaccg 26778571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 25876569 - 25876521
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||||||||| ||||||| |||  | ||||||||||||||||||||||    
T  25876569 actttcccatggtgggaaaaaaatcttctttcccaaattaaatggcacc 25876521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 41859358 - 41859310
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||||||||| ||||||||||   | ||||||||||||||||||||||    
T  41859358 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 41859310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 30478390 - 30478309
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||||||||| |||||||||| | |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  30478390 caatgttcctcttgaatctaatgattgagatttactttcccatgatgggaaagaagtttgctttcccaaattaaatggcacc 30478309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 48013398 - 48013317
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||||||||| |||||||||| || ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  48013398 caatgttcctcttgaatctaatggatgagatttactttcccatgatgggaaagaagtttgctttcccaaattaaatggcacc 48013317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 48013860 - 48013941
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||||||||| |||||||||| |||||||||||||||| ||||||||||||||||  |||||||| ||||||||||||||||    
T  48013860 caatgttcctcttgaatctaatggttgagatttacttttccatgatgggaaagaagtttgctttctcaaattaaatggcacc 48013941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 159 - 238
Target Start/End: Original strand, 30478851 - 30478930
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggca 238  Q
    |||||||||| |||||||||| | |||||||||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  30478851 caatgttcctcttgaatctaatgattgagatttactttcccatgatggaaaagaagtttgctttcccaaattaaatggca 30478930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 46707475 - 46707394
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||||||||| |||||||||| |||||||||||||||||||||||| ||||| ||  || ||||| ||||||||||||||||    
T  46707475 caatgttcctcttgaatctaatggttgagatttactttcccatgataggaaaaaagtttactttctcaaattaaatggcacc 46707394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 46707979 - 46708060
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||||||||| |||||||||| | ||||||||||||||||||||||| |||||||  ||||||| | |||||||||| ||||    
T  46707979 caatgttcctcttgaatctaatgattgagatttactttcccatgatgagaaagaagtttgcttttctaaattaaatgacacc 46708060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 7907569 - 7907643
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaa 233  Q
    ||||||| || |||||||||| |||||||||||||||| | ||||||  ||||||  ||||||||||||||||||    
T  7907569 caatgtttctcttgaatctaacggttgagatttacttttcaatgatgaaaaagaagtttgctttcccaaattaaa 7907643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 53600225 - 53600180
Alignment:
Q  194 tttcccatgatgggaaagaaacttgctttcccaaattaaatggcac 239  Q
    |||| |||||||||||||||  |||||||||||| |||||||||||    
T  53600225 tttctcatgatgggaaagaagtttgctttcccaagttaaatggcac 53600180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 11417735 - 11417687
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||||||||| ||||||||||   | ||||||||||||||||||||||    
T  11417735 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 11417687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 21166375 - 21166423
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||||||||||||||||||||   | ||||| ||||||||||||||||    
T  21166375 actttcccatgatgggaaagaactctcctttctcaaattaaatggcacc 21166423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 29651332 - 29651380
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||||||||| ||||||||||   | ||||||||||||||||||||||    
T  29651332 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 29651380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 4478932 - 4478851
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||||||||| |||||| ||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  4478932 caatgttcctcttgaatataatggttgagatttactttcccatgatgggaaagaagtttgctttcccaaattaaatggcacc 4478851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 16649785 - 16649705
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcac 239  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||||  || |||||||||||||||||||||    
T  16649785 caatgttcctcttgaatctaatggttgagatttactttcccatgatgggaaagaagtttactttcccaaattaaatggcac 16649705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 19521884 - 19521965
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||| ||||| |||||||||| | |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  19521884 caatattcctcttgaatctaatgattgagatttactttcccatgatgggaaagaagtttgctttcccaaattaaatggcacc 19521965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 37157603 - 37157522
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||||| || |||||||||| |||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||    
T  37157603 caatgtttctcttgaatctaatggttgagatttactttcctatgatgggaaagaagtttgctttcccaaattaaatggcacc 37157522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 19521422 - 19521342
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcac 239  Q
    |||||||||| |||||||||| |||| ||||||||||||||||||||||||||||  ||||||||||||||||||| ||||    
T  19521422 caatgttcctcttgaatctaatggttaagatttactttcccatgatgggaaagaagtttgctttcccaaattaaatagcac 19521342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 16650453 - 16650532
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcaccg 241  Q
    |||| ||||| |||||||||| |||||||||||||||||| |||   ||||||||  ||||||||||||||||||||||||||    
T  16650453 caatattcctcttgaatctaatggttgagatttactttcctatg---ggaaagaagtttgctttcccaaattaaatggcaccg 16650532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 37543339 - 37543258
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||||||| | |||||||||| ||||||||||||||||  |||||| ||||||||  || |||||||| |||||||||||||    
T  37543339 caatgttcatcttgaatctaatggttgagatttactttttcatgataggaaagaagtttactttcccatattaaatggcacc 37543258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 37158210 - 37158286
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||||||||| |||||||||| ||||||||||||||||||||     | ||||||  || ||||||||||||||||||||||    
T  37158210 caatgttcctcttgaatctaatggttgagatttactttccca-----gaaaagaagtttactttcccaaattaaatggcacc 37158286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 37548046 - 37547998
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||||||||||||||||||||   | ||||||||||||||||||||||    
T  37548046 actttcccatgatgggaaagaactctcctttcccaaattaaatggcacc 37547998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 21471065 - 21471017
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||||||||| ||||||||||   | ||||||||||||||||||||||    
T  21471065 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 21471017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 21471954 - 21472002
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||||||||| ||||||||||   | ||||||||||||||||||||||    
T  21471954 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 21472002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 24727869 - 24727821
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||| ||||||||||||| ||   ||||||||||||||||||||||||    
T  24727869 acttttccatgatgggaaaaaagtgtgctttcccaaattaaatggcacc 24727821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 37720086 - 37720038
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||||||||||||| ||| ||  |||||||||||||||||| ||||||    
T  37720086 actttcccatgatggaaaaaaagtttgctttcccaaattaaacggcacc 37720038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 25329464 - 25329383
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||| ||  ||||||||| |||||||||||||||    
T  25329464 caatgttcctcttgaatctaatggttgagatttactttcccatgatgggaaataagtttgctttcctaaattaaatggcacc 25329383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 30847824 - 30847901
Alignment:
Q  163 gttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||    
T  30847824 gttcctcttgaatctaatggttgagatttactttcccatgatgggaaggaagtttgctttcccaaattaaatggcacc 30847901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 43638045 - 43638126
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||||||||| || ||||||| |||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||    
T  43638045 caatgttcctcttaaatctaatggttgagatttactttcccatgatgggaaagaagtttactttcccaaattaaatggcacc 43638126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 25329925 - 25330001
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatg 235  Q
    |||||||||| || ||||||| |||||||||||||||||||||||||| ||||||  ||||||||||||||||||||    
T  25329925 caatgttcctcttaaatctaatggttgagatttactttcccatgatggaaaagaagtttgctttcccaaattaaatg 25330001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 42179179 - 42179099
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatggcac 239  Q
    |||||||||| || ||||||| |||||||||||||||| ||||||||| ||||||  ||||||||||||||||||||||||    
T  42179179 caatgttcctcttaaatctaatggttgagatttacttttccatgatggaaaagaagtttgctttcccaaattaaatggcac 42179099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 42179959 - 42180035
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaattaaatg 235  Q
    |||||||||| |||||| ||| ||||||||||||||||||||||||| |||||||  ||||||||||||||||||||    
T  42179959 caatgttcctcttgaatttaatggttgagatttactttcccatgatgagaaagaagtttgctttcccaaattaaatg 42180035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 159 - 229
Target Start/End: Complemental strand, 30847276 - 30847206
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaagaaacttgctttcccaaat 229  Q
    |||||||||| |||||||||| |||||||||||||||| ||||||||| ||||||  ||||||||||||||    
T  30847276 caatgttcctcttgaatctaatggttgagatttacttttccatgatggaaaagaagtttgctttcccaaat 30847206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 32994973 - 32994927
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggca 238  Q
    ||||||||||||||||||| |||  ||||||||||||||||||||||    
T  32994973 actttcccatgatgggaaaaaaatgtgctttcccaaattaaatggca 32994927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 19132812 - 19132860
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||||||||| ||||||||||  || ||||||||||||||||||||||    
T  19132812 actttcccatggtgggaaagaactttcctttcccaaattaaatggcacc 19132860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 31556217 - 31556264
Alignment:
Q  193 ctttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    |||||||||||||||||||||   | ||||||||||||||||||||||    
T  31556217 ctttcccatgatgggaaagaactctcctttcccaaattaaatggcacc 31556264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 43637497 - 43637456
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttccca 200  Q
    ||||||| || |||||||||| ||||||||||||||||||||    
T  43637497 caatgtttctcttgaatctaatggttgagatttactttccca 43637456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 36750437 - 36750485
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||||||||| ||||||||||   | ||||||||||||||||||||||    
T  36750437 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 36750485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 49749173 - 49749125
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||||| ||||||||||| ||| || ||||||||| ||||||||||||    
T  49749173 actttcctatgatgggaaaaaaatttcctttcccaagttaaatggcacc 49749125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 27269 - 27220
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcaccg 241  Q
    ||||||||||||||||||||||   | |||||||||||||||||||||||    
T  27269 actttcccatgatgggaaagaactctcctttcccaaattaaatggcaccg 27220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 210
Target Start/End: Original strand, 43185 - 43236
Alignment:
Q  159 caatgttccttttgaatctaaaggttgagatttactttcccatgatgggaaa 210  Q
    |||||||||| || ||| ||| |||| |||||||||||||||||||||||||    
T  43185 caatgttcctctttaatttaatggttaagatttactttcccatgatgggaaa 43236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 160 - 208
Alignment:
Q  192 actttcccatgatgggaaagaaacttgctttcccaaattaaatggcacc 240  Q
    ||||||||||| ||||||||||   | ||||||||||||||||||||||    
T  160 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University