View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2272_low_66 (Length: 299)
Name: NF2272_low_66
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_low_66 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 280
Target Start/End: Original strand, 30900156 - 30900424
Alignment:
| Q |
13 |
attattctggtgggacaatatgtattatatataatgtctacaaagaattatgaatcgga-gtaactttatagaaatttattttcggagcaagtttatcat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
30900156 |
attattctggtgggacaatatgtattatatataaagtctacaaagaattatgaatcggaagtaactctatagaaatttattttcggagcaagtttatcgt |
30900255 |
T |
|
| Q |
112 |
cacccatatatatcatttcatctctaattcaatttttccctctatatataatcaatctcctcacttagtggaataatacttgattgatgttattgttgta |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| |||||||| |
|
|
| T |
30900256 |
cacccatatatatcatttcatctctaattcaatttttccctctatatataatcaatctcctcacttagtgggataagacttgattaatgttgttgttgta |
30900355 |
T |
|
| Q |
212 |
tagtcattgttcttatacagaatacaaaagttatacactatattttttatttgtggatgaggtcaacat |
280 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30900356 |
tagtcattgttcttatacggaatacaaaagttatacactatattttttaattgtggatgaggtcaacat |
30900424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University