View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2272_low_7 (Length: 751)

Name: NF2272_low_7
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2272_low_7
NF2272_low_7
[»] chr6 (11 HSPs)
chr6 (98-733)||(1832401-1833037)
chr6 (239-322)||(1822184-1822267)
chr6 (653-722)||(1836332-1836401)
chr6 (239-319)||(1841796-1841876)
chr6 (52-93)||(1832301-1832342)
chr6 (556-609)||(1836239-1836292)
chr6 (336-421)||(1842628-1842712)
chr6 (561-591)||(1839707-1839737)
chr6 (98-132)||(1847047-1847081)
chr6 (241-322)||(1838926-1839007)
chr6 (239-276)||(6465567-6465604)
[»] chr5 (2 HSPs)
chr5 (193-243)||(17848982-17849033)
chr5 (667-702)||(17849049-17849084)


Alignment Details
Target: chr6 (Bit Score: 574; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 98 - 733
Target Start/End: Original strand, 1832401 - 1833037
Alignment:
Q  98 aaagaatgtcggctcggcattcagctcttaccatttcttcctatctcttaagtatgcgnnnnnnnttatccaattttgagacaagaaccttaatcagcct 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |       ||||||||||||||||||||||||||| |||||||    
T  1832401 aaagaatgtcggctcggcattcagctcttaccatttcttcctatctcttaagtatgtgaaaaaaattatccaattttgagacaagaaccttattcagcct 1832500  T
Q  198 aaatcatgaagtccttgataatatgttttgaattgaacatgttttgaaagatgttgaaggtttgaactcatctgcaataacaactatatcttcatacttt 297  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1832501 aagtcatgaagtccttgataatatgttttgaattgaacatgttttgaaagatgttgaaggtttgaactcatctgcaataacaactatatcttcatacttt 1832600  T
Q  298 tatcgtaaataaattgctagggctgaaagatgatgatttggtggctgaactgactaagtgtgtgttttttacaaagtaattgagaacagtgaatcaatga 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1832601 tatcgtaaataaattgctagggctgaaagatgatgatttggtggctgaactgactaagtgtgtgttttttacaaagtaattgagaacagtgaatcaatga 1832700  T
Q  398 tgtcaagcattttctcttacatttcactttttaatgaattttagttttgatattgcaaatatgtttatcagtttcaatgtttcctggcagttaagtgttg 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1832701 tgtcaagcattttctcttacatttcactttttaatgaattttagttttgatattgcaaatatgtttatcagtttcaatgtttcctggcagttaagtgttg 1832800  T
Q  498 aaaagaaagtgaatgtgtttcgattgtatctatgttagtttcatccaaatcttgttattatatagtgttctaagcttttaaataaaagaagtaataatgc 597  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1832801 acaagaaagtgaatgtgtttcgattgtatctatgttagtttcatccaaatcttgttattatatagtgttctaagcttttaaataaaagaagtaataatgc 1832900  T
Q  598 atagaaatcaaatcaaatattactaaaaagagaaacttattgaggctaaatcttgaagtcgaatttattaagtttctgtcaaaaatatacaaagttgaat 697  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1832901 atagaaatcaaatcaaata-tactaaaaagagaaacttattgaggctaaatcttgaagtcgaatttactaagtttctgtcaaaaatatacaaagttgaat 1832999  T
Q  698 --agagacaatattaagtcccacatcgacaacttataa 733  Q
      |||||||||||||||||||||||||||||| |||||    
T  1833000 agagagacaatattaagtcccacatcgacaacatataa 1833037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 239 - 322
Target Start/End: Original strand, 1822184 - 1822267
Alignment:
Q  239 ttttgaaagatgttgaaggtttgaactcatctgcaataacaactatatcttcatacttttatcgtaaataaattgctagggctg 322  Q
    |||||||||||||||||||| |||||||||||||||||||||| |  ||||| ||||||||| ||||||  ||||| |||||||    
T  1822184 ttttgaaagatgttgaaggtatgaactcatctgcaataacaacaaattcttcttacttttatagtaaattgattgccagggctg 1822267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 653 - 722
Target Start/End: Original strand, 1836332 - 1836401
Alignment:
Q  653 aagtcgaatttattaagtttctgtcaaaaatatacaaagttgaatagagacaatattaagtcccacatcg 722  Q
    ||||| ||||||  |||||||||||||||||||| ||||||||||||| ||  |||||||||||||||||    
T  1836332 aagtccaatttaccaagtttctgtcaaaaatataaaaagttgaatagaaaccgtattaagtcccacatcg 1836401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 239 - 319
Target Start/End: Original strand, 1841796 - 1841876
Alignment:
Q  239 ttttgaaagatgttgaaggtttgaactcatctgcaataacaactatatcttcatacttttatcgtaaataaattgctaggg 319  Q
    |||||||| |||||||||||||||||||||||| ||||||||  |  ||||| ||||||||| ||||||  ||||||||||    
T  1841796 ttttgaaatatgttgaaggtttgaactcatctgaaataacaagaaattcttcttacttttatggtaaatctattgctaggg 1841876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 1832301 - 1832342
Alignment:
Q  52 gaaaggagaaaatatgtacgagaaagtgtttactaaaagtat 93  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  1832301 gaaaggagaaaatatgtatgagaaagtgtttactaaaagtat 1832342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 556 - 609
Target Start/End: Original strand, 1836239 - 1836292
Alignment:
Q  556 tatatagtgttctaagcttttaaataaaagaagtaataatgcatagaaatcaaa 609  Q
    |||||||||||||||  |||||||||||| ||||||||||||||| ||||||||    
T  1836239 tatatagtgttctaatattttaaataaaataagtaataatgcataaaaatcaaa 1836292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 336 - 421
Target Start/End: Original strand, 1842628 - 1842712
Alignment:
Q  336 tggtggctgaactgactaagtgtgtgttttttacaaagtaattgagaacagtgaatcaatgatgtcaagcattttctcttacattt 421  Q
    ||||||||||  | |||||||| ||| |||||||||||| |||||||||| ||||  |||||| ||||| ||||| ||||||||||    
T  1842628 tggtggctgatttcactaagtgagtgatttttacaaagt-attgagaacaatgaacgaatgatatcaagtattttatcttacattt 1842712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 561 - 591
Target Start/End: Original strand, 1839707 - 1839737
Alignment:
Q  561 agtgttctaagcttttaaataaaagaagtaa 591  Q
    |||||||||||||||||||||||||||||||    
T  1839707 agtgttctaagcttttaaataaaagaagtaa 1839737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 1847047 - 1847081
Alignment:
Q  98 aaagaatgtcggctcggcattcagctcttaccatt 132  Q
    ||||||||||||||||| |||||||||||||||||    
T  1847047 aaagaatgtcggctcggaattcagctcttaccatt 1847081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 241 - 322
Target Start/End: Original strand, 1838926 - 1839007
Alignment:
Q  241 ttgaaagatgttgaaggtttgaactcatctgcaataacaactatatcttcatacttttatcgtaaataaattgctagggctg 322  Q
    |||||||||||||||   |||||||||| |||||||| | | |  ||||||||||||||| ||||||  ||||| |||||||    
T  1838926 ttgaaagatgttgaataattgaactcatttgcaataatatcaaattcttcatacttttatggtaaattgattgccagggctg 1839007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 6465604 - 6465567
Alignment:
Q  239 ttttgaaagatgttgaaggtttgaactcatctgcaata 276  Q
    ||||||||||||||||||||||||| || |||||||||    
T  6465604 ttttgaaagatgttgaaggtttgaattcgtctgcaata 6465567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 17848982 - 17849033
Alignment:
Q  193 agcctaaatcatgaagtccttg-ataatatgttttgaattgaacatgttttg 243  Q
    |||||||||||||||||||||| ||||||||||||||| ||||  |||||||    
T  17848982 agcctaaatcatgaagtccttgtataatatgttttgaactgaatgtgttttg 17849033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 667 - 702
Target Start/End: Original strand, 17849049 - 17849084
Alignment:
Q  667 aagtttctgtcaaaaatatacaaagttgaatagaga 702  Q
    ||||||||||||||||||||| ||||||||||||||    
T  17849049 aagtttctgtcaaaaatatacgaagttgaatagaga 17849084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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