View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_low_72 (Length: 271)
Name: NF2272_low_72
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_low_72 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 43077315 - 43077153
Alignment:
| Q |
11 |
catcatcatcactattatttctaaataaacaataagaccttgaaagcgataaacttccaacccatttctcaccttcttaattttcctaacaaaaaccact |
110 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43077315 |
catcatcatcactattatttctaaataaactataacaccttgaaagcgataaacttccaacccattttccaccttcttaattttcctaacaaaaaccact |
43077216 |
T |
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| Q |
111 |
ctctagctaccatttttcactcctctttcaaatacttcaaacctcactttctccaaattccac |
173 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43077215 |
ctctagctaccatttttcactcctctctcaaatacttcaaacctcactttctccaaattccac |
43077153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 43091488 - 43091326
Alignment:
| Q |
11 |
catcatcatcactattatttctaaataaacaataagaccttgaaagcgataaacttccaacccatttctcaccttcttaattttcctaacaaaaaccact |
110 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43091488 |
catcatcatcactattatttctaaataaactataacaccttgaaagcgataaacttccaacccatttcccaccttcttaattttcctaacaaaaaccact |
43091389 |
T |
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| Q |
111 |
ctctagctaccatttttcactcctctttcaaatacttcaaacctcactttctccaaattccac |
173 |
Q |
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||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
43091388 |
ctctagcaaccatttttcactcctctctcaaatacttcaaacctcactctctccaaattccac |
43091326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 43092408 - 43092247
Alignment:
| Q |
11 |
catcatcatcactattatttctaaataaacaataagaccttgaaagcgataaacttccaacccatttctcaccttcttaattttcctaacaaaaaccact |
110 |
Q |
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|||||||||||||||||||||||||||||| |||| | |||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
43092408 |
catcatcatcactattatttctaaataaactataatat-ttgaaaaggataaacttccaacccatttcccaccttcttaattttcctaacaaaaatcact |
43092310 |
T |
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| Q |
111 |
ctctagctaccatttttcactcctctttcaaatacttcaaacctcactttctccaaattccac |
173 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||| |
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| T |
43092309 |
ctctagctaccatttttcactcctctctcaaatacttcaaaccttactttttccaaattccac |
43092247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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