View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_low_73 (Length: 266)
Name: NF2272_low_73
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_low_73 |
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Alignment Details
Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 140 - 251
Target Start/End: Original strand, 3656711 - 3656822
Alignment:
| Q |
140 |
gaaatatctctcatcttcacgtgataaatggcaaattttaaccaacaatagattggtttaagtagtaagaaattttgactccttaaatatgtatgtaatt |
239 |
Q |
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| T |
3656711 |
gaaatatctctcatcttcacgtgataaatggcaaattttaaccaacaatagattggtttaagtagtaagaaattttggctccttaagtatgtatgtagtt |
3656810 |
T |
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| Q |
240 |
agaggttttgat |
251 |
Q |
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| T |
3656811 |
agaggttttgat |
3656822 |
T |
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Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 3656623 - 3656712
Alignment:
| Q |
20 |
atacatatatataatagacatgttaaagtaattttgaaattttaaagaatatctctgtcatttaagttttctatacatcaaactaaaaga |
109 |
Q |
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| T |
3656623 |
atacatatatataatagacatgttaaagtaattttgaaattttaaagaatatctctgtcatttaagttttctatacatcaaactaaaaga |
3656712 |
T |
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