View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_low_76 (Length: 265)
Name: NF2272_low_76
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_low_76 |
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| [»] scaffold0009 (2 HSPs) |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 29 - 259
Target Start/End: Complemental strand, 47650268 - 47650038
Alignment:
| Q |
29 |
atttaattttatacgtaaacatctactatatttctatttgtgttatttacaggaaattagtaacaggaacaaatcaaataaatctaaa-aagttattaat |
127 |
Q |
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|||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||| |
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| T |
47650268 |
atttaattttatacgtaaacatatactatatttctacttgtattatttacaggaaattagttacaggaacaaatcaaataaatctaaacaagttataaat |
47650169 |
T |
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| Q |
128 |
catagatgtggaaggaagtcatttcaagctgttagctatgacgcggtaaaatataaaagatcaaatctccannnnnnnggtatatttgtcattgacttga |
227 |
Q |
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| T |
47650168 |
catagatgtggaaggaagtcatttcaagccgttagctatgatgcggtaaaatataaaatatcaaatctcc-ttttgttggtatatttgtcattgacttga |
47650070 |
T |
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| Q |
228 |
taacttatatgtatttatattctgtgatgatg |
259 |
Q |
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| T |
47650069 |
taacttacatgtatttatattttgtgatgatg |
47650038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 134 - 248
Target Start/End: Original strand, 170660 - 170774
Alignment:
| Q |
134 |
tgtggaaggaagtcatttcaagctgttagctatgacgcggtaaaatataaaagatcaaatctccannnnnnnggtatatttgtcattgacttgataactt |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||| |
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| T |
170660 |
tgtggaaggaagtcatttcaagctgttagctatgacgcggtaaaatatataatatcaaatctcctttttcctagtatatttgtcattgacttgataactt |
170759 |
T |
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| Q |
234 |
atatgtatttatatt |
248 |
Q |
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| T |
170760 |
atatgtatttatatt |
170774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 170609 - 170641
Alignment:
| Q |
29 |
atttaattttatacgtaaacatctactatattt |
61 |
Q |
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| T |
170609 |
atttaattctatacgtaaacatctactatattt |
170641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 83 - 259
Target Start/End: Complemental strand, 30754353 - 30754173
Alignment:
| Q |
83 |
aattagtaacaggaacaaatcaaataaatctaaa-aagttattaatcatagatgtggaaggaagtcatttcaagctgttagctatgacgcggtaaaatat |
181 |
Q |
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||||||||| |||||||||| |||||| |||||| ||||||||||| |||| |||||||||| | |||||||| ||||||||||||||||||| ||||| |
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| T |
30754353 |
aattagtaaaaggaacaaattaaataagtctaaacaagttattaattgtagacgtggaaggaatttatttcaagttgttagctatgacgcggtataatat |
30754254 |
T |
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| Q |
182 |
---aaaagatcaaatctccannnnnnnggtatatttgtcattgacttgataacttatatgtatttatattctgtgatgatg |
259 |
Q |
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|||| || ||||||| ||||||||| |||||||||||||||||||||| || ||||||| |||||||||| |
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| T |
30754253 |
aaaaaaatataaaatctctctttttttggtatatttatcattgacttgataacttatatctaattatattttgtgatgatg |
30754173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 131
Target Start/End: Complemental strand, 37332924 - 37332844
Alignment:
| Q |
52 |
tactatatttctatttgtgttatttacaggaaattagtaacaggaacaaatcaaataaatctaaa-aagttattaatcata |
131 |
Q |
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| T |
37332924 |
tactatatttctatttgtattatttacaggcaattagcgaaaggaacaaatcaaataaagcaaaacaagttattaatcata |
37332844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 92250 - 92197
Alignment:
| Q |
206 |
ggtatatttgtcattgacttgataacttatatgtatttatattctgtgatgatg |
259 |
Q |
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| T |
92250 |
ggtatatttatcattgacttgataacttatatgtatttatattttgtgacgatg |
92197 |
T |
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