View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2272_low_85 (Length: 246)

Name: NF2272_low_85
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2272_low_85
NF2272_low_85
[»] chr7 (3 HSPs)
chr7 (1-246)||(17821830-17822075)
chr7 (23-242)||(17777255-17777474)
chr7 (1-220)||(17807926-17808145)


Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 17821830 - 17822075
Alignment:
Q  1 tgttccagaagtgcaagttggtggcccgtaaacccatggccaaccaaaacaatatgtttacagcccaaggtcgagaagaccccggtcaaaacacaggaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  17821830 tgttccagaagtgcaagttggtggcccgtaaacccatggccaaccaaaacaatatgtttacagcccaaggtcgagaagaccccggtcaaaacacaggtac 17821929  T
Q  101 ttcaattcaacaatgtgatctaacaccaagttcagaccttaagcccgtcataggctccatcaaaactttcctcggccgcccatggaagaactactccagg 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17821930 ttcaattcaacaatgtgacctaacaccaagttcagaccttaagcccgtcgtaggctccatcaaaactttcctcggccgcccatggaagaaatactccagg 17822029  T
Q  201 actgttgtgatgcaatcctttctggacagccacatcgacccaacag 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  17822030 actgttgtgatgcaatcctttctggacagccacatcgacccaacag 17822075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 23 - 242
Target Start/End: Original strand, 17777255 - 17777474
Alignment:
Q  23 ggcccgtaaacccatggccaaccaaaacaatatgtttacagcccaaggtcgagaagaccccggtcaaaacacaggaacttcaattcaacaatgtgatcta 122  Q
    |||||| |||||||||||||||||||| || ||| | || ||||||||||||||||||||    || ||||| | |||||||||||| ||||||||  ||    
T  17777255 ggcccgaaaacccatggccaaccaaaaaaacatggtcactgcccaaggtcgagaagacccaaaccagaacactgcaacttcaattcagcaatgtgacgta 17777354  T
Q  123 acaccaagttcagaccttaagcccgtcataggctccatcaaaactttcctcggccgcccatggaagaactactccaggactgttgtgatgcaatcctttc 222  Q
    | |||||| |||||||| ||||| ||   ||||||||||||||| | ||| |||||||||||||| || ||||||||||| |||||| |||| ||| |      
T  17777355 ataccaagctcagacctcaagcctgtgcaaggctccatcaaaacatacctaggccgcccatggaaaaaatactccaggaccgttgtgttgcagtccgtcg 17777454  T
Q  223 tggacagccacatcgaccca 242  Q
    ||||| ||||||| ||||||    
T  17777455 tggacggccacattgaccca 17777474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 17807926 - 17808145
Alignment:
Q  1 tgttccagaagtgcaagttggtggcccgtaaacccatggccaaccaaaacaatatgtttacagcccaaggtcgagaagaccccggtcaaaacacaggaac 100  Q
    |||| |||||||||||  | |||||||| || |||||||||||||||||||| ||| | |||||||| ||||||  ||||||    || ||||| | |||    
T  17807926 tgttgcagaagtgcaaactcgtggcccgaaagcccatggccaaccaaaacaacatggtcacagcccagggtcgaatagacccaaaccagaacaccgcaac 17808025  T
Q  101 ttcaattcaacaatgtgatctaacaccaagttcagaccttaagcccgtcataggctccatcaaaactttcctcggccgcccatggaagaactactccagg 200  Q
    ||||||||| ||||| ||| |||  |||||  | ||||| || || || ||||||||| ||||||| | | | ||||||||||||||||| |||||||||    
T  17808026 ttcaattcagcaatgcgatgtaatcccaagcacggacctcaaacctgtgataggctccgtcaaaacctacttaggccgcccatggaagaaatactccagg 17808125  T
Q  201 actgttgtgatgcaatcctt 220  Q
    |||||||||||||| |||||    
T  17808126 actgttgtgatgcagtcctt 17808145  T

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