View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_low_88 (Length: 243)
Name: NF2272_low_88
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_low_88 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 38188301 - 38188530
Alignment:
| Q |
1 |
aaatccttcaaacctaacttcgagaatataatcgataaaatagaatctggcaactcaatcttggactttttagacctccacttcattgttactgcgatta |
100 |
Q |
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| T |
38188301 |
aaatccttcaaacctaacttcgagaatataatagataaaatagaatctggcaactcaatcttggactttttagacctcctcttcattgttactgcgatta |
38188400 |
T |
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| Q |
101 |
ataacgaacacacaccagaatttgacttatattaaaaccataact--aatcaattagaaaatatatactagtttttattaatttcatcaagatgagaata |
198 |
Q |
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| T |
38188401 |
ataacgaacacacaccagaatttgaattatattaaaaccataactaaaatcaattagaaaatatatactagtttttattaatttcatcaagatgagaata |
38188500 |
T |
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| Q |
199 |
aatatatgtacaccccacggaagaaattat |
228 |
Q |
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| T |
38188501 |
aatatatgtacaccacacggaagaaattat |
38188530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 65 - 228
Target Start/End: Complemental strand, 38597918 - 38597757
Alignment:
| Q |
65 |
actttttagacctccacttcattgttactgcgattaataacgaacacacaccagaatttgacttatattaaaaccataactaatcaattagaaaatatat |
164 |
Q |
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||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||| |
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| T |
38597918 |
actttttagacctcctcttcattgttactgcagttaataacgaacacacaccagaatttgaactatattaaaagcataactaatcaatttgaaaatatat |
38597819 |
T |
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| Q |
165 |
actagtttttattaatttcatcaagatgagaataaatatatgtacaccccacggaagaaattat |
228 |
Q |
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| T |
38597818 |
atttgttattattaatttcatcatgatgagcat--atatatgtacactacacggaagcaattat |
38597757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 38167066 - 38167208
Alignment:
| Q |
1 |
aaatccttcaaacctaacttcgagaatataatcgataaaatagaatctggcaactcaatcttggactttttagacctccacttcattgttactgcgatta |
100 |
Q |
| |
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|||||||||||||||||||| || |||||||||||||||||| |||| |||||||||||||||| |||||||||||||| |||||||| |||||| |||| |
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| T |
38167066 |
aaatccttcaaacctaactttgaaaatataatcgataaaatacaatcaggcaactcaatcttgggctttttagacctcctcttcattgctactgcaatta |
38167165 |
T |
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| Q |
101 |
ataacgaacacacaccagaatttgacttatattaaaaccataa |
143 |
Q |
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||| ||||||||||||||||| | ||| ||||||| ||||| |
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| T |
38167166 |
gtaatgaacacacaccagaattataattaaattaaaagcataa |
38167208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 38150759 - 38150881
Alignment:
| Q |
1 |
aaatccttcaaacctaacttcgagaatataatcgataaaatagaatctggcaactcaatcttggactttttagacctccacttcattgttactgcgatta |
100 |
Q |
| |
|
|||||||||||||||||| | || || ||| |||||||||| |||| |||||||||||||||| |||||||||||||| |||||||| |||||| |||| |
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| T |
38150759 |
aaatccttcaaacctaaccttgaaaagatattcgataaaatgcaatcaggcaactcaatcttgggctttttagacctcctcttcattgctactgcaatta |
38150858 |
T |
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| Q |
101 |
ataacgaacacacaccagaattt |
123 |
Q |
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||||||| | |||||||||||| |
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| T |
38150859 |
ataacgagtaaacaccagaattt |
38150881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 38158162 - 38158287
Alignment:
| Q |
1 |
aaatccttcaaacctaacttcgagaatataatcgataaaatagaatctggcaactcaatcttggactttttagacc---tccacttcattgttactgcga |
97 |
Q |
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|||||||||||||||||||| || |||||| | ||||||||| |||| ||||| ||||||||| ||||||||||| ||| |||||||| |||||| | |
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| T |
38158162 |
aaatccttcaaacctaactttgaaaatatatttgataaaatacaatcaggcaatgcaatcttgggctttttagacctcttcctcttcattgctactgcaa |
38158261 |
T |
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| Q |
98 |
ttaataacgaacacacaccagaattt |
123 |
Q |
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|||||||||| || ||| |||||||| |
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| T |
38158262 |
ttaataacgagcaaacagcagaattt |
38158287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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