View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_low_89 (Length: 242)
Name: NF2272_low_89
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_low_89 |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 182
Target Start/End: Complemental strand, 9023884 - 9023715
Alignment:
| Q |
14 |
aatatactttgactaattataaatatagaactatttacactcatagtatttaatatgacgtt-ggaacatgtaaaagcacctagaaaatcacgttaccgt |
112 |
Q |
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| T |
9023884 |
aatatactttgactaattataaatatagaactatttacactcatagtgtttggtatgacgtttggaacatgtaaaagcacgtagaaaatcatgttaccgt |
9023785 |
T |
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| Q |
113 |
agaagctatgttttccagcttctacctttttacgataaaagtacattgaaaagtggtattaaacttccaa |
182 |
Q |
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| T |
9023784 |
agaagtcatgttttccagcttctaccttttcacggtaaaagtacattgaaaagtggtattaagcttccaa |
9023715 |
T |
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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 66 - 160
Target Start/End: Complemental strand, 5545534 - 5545439
Alignment:
| Q |
66 |
atatgacgttggaacatgtaaaagcac-ctagaaaatcacgttaccgtagaagctatgttttccagcttctacctttttacgataaaagtacattg |
160 |
Q |
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| T |
5545534 |
atatgatgttggaacatgtaaaaacacggtagaaaatcatgttatcgtagaagccatgtttttcagcttgtgcctttttacggtaaaagtgcattg |
5545439 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 182
Target Start/End: Original strand, 46863483 - 46863599
Alignment:
| Q |
67 |
tatgacgttggaacatgtaaaagcacc-tagaaaatcacgttaccgtagaagctatgttttccagcttctacctttttacgataaaagtacattgaaaag |
165 |
Q |
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| T |
46863483 |
tatggcgttggaacatgtaaaagtacggtggaaaatcacgtttgggtagaagatatgattttcagcttctgccttttcacggtgaaagtgcattggaaag |
46863582 |
T |
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| Q |
166 |
tggtattaaacttccaa |
182 |
Q |
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| T |
46863583 |
tggtattggacttccaa |
46863599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 140
Target Start/End: Complemental strand, 54592854 - 54592794
Alignment:
| Q |
81 |
atgtaaaagcacc-tagaaaatcacgttaccgtagaagctatgttttccagcttctacctt |
140 |
Q |
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| T |
54592854 |
atgtaaaagcacggtaaaaaatcacgttatcgtagaagctatgttttccagcttctgcctt |
54592794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 133
Target Start/End: Original strand, 49136649 - 49136687
Alignment:
| Q |
95 |
agaaaatcacgttaccgtagaagctatgttttccagctt |
133 |
Q |
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| T |
49136649 |
agaaaatcacgttactggagaagctatgttttccagctt |
49136687 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 2428506 - 2428575
Alignment:
| Q |
67 |
tatgacgttggaacatgtaaaagcac-ctagaaaatcacgttaccgtagaagctatgttttccagcttct |
135 |
Q |
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| T |
2428506 |
tatgacgttggaacttgtaaaagcacaatggaaaatcacgtttaggtagaaaccatgttttccagcttct |
2428575 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 6726329 - 6726281
Alignment:
| Q |
94 |
tagaaaatcacgttaccgtagaagctatgttttccagcttctacctttt |
142 |
Q |
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| T |
6726329 |
tagaatatcacgtcacagttgaagctatgttttccagcttctacttttt |
6726281 |
T |
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