View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2272_low_90 (Length: 240)
Name: NF2272_low_90
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_low_90 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 8792718 - 8792510
Alignment:
| Q |
15 |
cataggctactgattattgaatattcacaatcaaattcaggaaattgataaagttggtttcatctatattgcatgatcctcaaaattatttcttgcaacg |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8792718 |
cataagctactgattattgaatattcacaatcaaattcaggaaattgataaactcggtttcatctatattgcatgatcctcaaaattatttcttgcaacg |
8792619 |
T |
|
| Q |
115 |
gttctacaaacaatattgttcacaagcaaggtataattttttgtcataccaaaattacaagggttgtaatctatctacagaatgcaggacaatgatatag |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8792618 |
gttctacaaacaatattgttcacaagcaaggtataattttttgtcataccaaaattacaagggttgtaatctatctacagaatgcaggacaatgatataa |
8792519 |
T |
|
| Q |
215 |
aatatgctg |
223 |
Q |
| |
|
||||||||| |
|
|
| T |
8792518 |
aatatgctg |
8792510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University