View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_low_91 (Length: 239)
Name: NF2272_low_91
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_low_91 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 3458908 - 3459126
Alignment:
| Q |
19 |
tttacagccatccattgatcctagagtggaggtgtcatctctttggaacaaggacgtccctttaaagatagttccgtgtgtgtggcgtctgttttgtgat |
118 |
Q |
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| T |
3458908 |
tttacagccatccattgatcctagagtggaggtgtcatctcttcggaacaaggacgtccctttaaagatagtta--tgtgtgtggcgtctgttttatgat |
3459005 |
T |
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| Q |
119 |
aggctgcctgcaaaagataatcttcttcgacgaggagttattgataatgattcccgtttgtgtctcagtgggtgtggatttatggaaacttcatctcatt |
218 |
Q |
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| T |
3459006 |
aggctgcctgcaaaagataatcttcttcgacgaggagttattgataatgattcccgtttgtgtgtcagtgggtgtggatttatggaaacttcatctcatt |
3459105 |
T |
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| Q |
219 |
tgtttttacattgtaatcatt |
239 |
Q |
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| T |
3459106 |
tgtttttacattgtaatcatt |
3459126 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 239
Target Start/End: Complemental strand, 25130876 - 25130753
Alignment:
| Q |
116 |
gataggctgcctgcaaaagataatcttcttcgacgaggagttattgataatgattcccgtttgtgtctcagtgggtgtggatttatggaaacttcatctc |
215 |
Q |
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| T |
25130876 |
gataggctgcctacaaaggataaccttcttcgtcgtggagttattaatattgattcccggttgcgtgttggggtgtgcggatcttcggaaacttcagctc |
25130777 |
T |
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| Q |
216 |
atttgtttttacattgtaatcatt |
239 |
Q |
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| T |
25130776 |
acttattcttacattgtaatcatt |
25130753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 235
Target Start/End: Original strand, 44674743 - 44674877
Alignment:
| Q |
101 |
tggcgtctgttttgtgataggctgcctgcaaaagataatcttcttcgacgaggagttattgataatgattcccgtttgtgtctcagtgggtgtggattta |
200 |
Q |
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|||| ||||||| | |||||| ||||| |||| |||||||||||||| || |||||||||| ||| |||||||| |||| | | ||||| || | | |
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| T |
44674743 |
tggcatctgtttcgagataggttgcctacaaaggataatcttcttcgtcgtggagttattggtaacgattcccgaatgtgcgttggagggtgcggttatg |
44674842 |
T |
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| Q |
201 |
tggaaacttcatctcatttgtttttacattgtaat |
235 |
Q |
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| T |
44674843 |
tggaaacttctgctcatttattcttacattgtaat |
44674877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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