View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_low_92 (Length: 238)
Name: NF2272_low_92
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_low_92 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 45091223 - 45091030
Alignment:
| Q |
16 |
gatccaacaccaaatctgcatgtttgcagggaacaataaggaataagacattnnnnnnnntcaccatataaattataaacatgaacaaagcttcataata |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
45091223 |
gatccaacaccaaatctgcatgtttgcagggaacaataaggaataagacattaaaaaaaatcaccatataaattataaacatgaacaaagcttcataata |
45091124 |
T |
|
| Q |
116 |
taaatcagatcagtttcatattgagtggcagcacggtctgctatcatcctataagaacagcaataatcacgttgattactatcttaaccatacc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45091123 |
taaatcagatcagtttcatattgagtggcagcacggtctgctatcatcctataagaacagcaataatcacgttgattactatctgaaccatacc |
45091030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 11073470 - 11073675
Alignment:
| Q |
16 |
gatccaacaccaaatctgcatgtttgcagggaacaataaggaataagacattnnnnnnnntcaccatataaattataaacatgaacaaagcttcataata |
115 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
11073470 |
gatccaacaccaaatcttcatgtttgcagggaacaataaggaataagacattaaaaaaaatcaccatataaattatatacatgaacaaagcttcataata |
11073569 |
T |
|
| Q |
116 |
taaatcagatcagtttcatattgagtggcagcacggtctgctatcatcctataagaacagcaataatcacgttgattactatcttaaccataccgctagt |
215 |
Q |
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||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
11073570 |
taaatcagatcagtttcatattgaggggcagcacggtccgctatcatcctataagaacagcaataatcatgttgattactatctgaaccataccgctagt |
11073669 |
T |
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| Q |
216 |
tatttt |
221 |
Q |
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|||||| |
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| T |
11073670 |
tatttt |
11073675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 37253948 - 37254131
Alignment:
| Q |
16 |
gatccaacaccaaatctgcatgtttgcagggaacaataaggaataagacattnnnnnnnntcaccatataaattataaacatgaacaaagcttcataata |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37253948 |
gatccaacaccaaatctgcatgtttgcagggaacaataaggaataagatattaaaaaaaatcaccatataaattataaacatgaacaaagcttcataata |
37254047 |
T |
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| Q |
116 |
taaatcagatcagtttcatattgagtggcagcacggtctgctatcatcctataagaacagcaataatcacgttgattactatct |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37254048 |
taaatcagatcagtttcatattgagtggcagcacggtctgctatcatcctataagaacaacaataatcacgttgattactatct |
37254131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 100 - 221
Target Start/End: Original strand, 17961299 - 17961420
Alignment:
| Q |
100 |
acaaagcttcataatataaatcagatcagtttcatattgagtggcagcacggtctgctatcatcctataagaacagcaataatcacgttgattactatct |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17961299 |
acaaagcttcataatataaatcagatcagtttcatattgagtagcagcacggtctgctatcatcctataagaacagcaataatcacgttgattactatct |
17961398 |
T |
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| Q |
200 |
taaccataccgctagttatttt |
221 |
Q |
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|| |||||||||||||||||| |
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| T |
17961399 |
gaatcataccgctagttatttt |
17961420 |
T |
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