View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_low_98 (Length: 231)
Name: NF2272_low_98
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_low_98 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 47811168 - 47811384
Alignment:
| Q |
1 |
ttctgtaatcccatattccttccttattctcataatccttttcacatctaaagtaaacgcagatgacaagttcacctacttatgtgacaaaaataacgat |
100 |
Q |
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| T |
47811168 |
ttctgtaatcccatattccttcctcattctcataatccttttcacatctaaagtaaacgcagatgacaagttcacctacttatgtgacaaaaataacgat |
47811267 |
T |
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| Q |
101 |
agaggcgactacataaccggtagtacctaccataacaacctcaaaatcgctttcatatacctcactttcaactcaaaagttaactacggtttctacaata |
200 |
Q |
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| T |
47811268 |
agaggcgactacataaccggtagtacctaccataacaacctcaaaatcgctttcatatacctcactttcaactcaaaagttaactacggtttctacaata |
47811367 |
T |
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| Q |
201 |
caaattacggccaaaac |
217 |
Q |
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| T |
47811368 |
caaattacggccaaaac |
47811384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 94 - 217
Target Start/End: Original strand, 47781735 - 47781858
Alignment:
| Q |
94 |
taacgatagaggcgactacataaccggtagtacctaccataacaacctcaaaatcgctttcatatacctcactttcaactcaaaagttaactacggtttc |
193 |
Q |
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| T |
47781735 |
taacgatagaggtgactacataaccggtagtacctaccacaacaacctcaaaatcgcttttatctacctcactttcaactcaaaaattgactacggtttc |
47781834 |
T |
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| Q |
194 |
tacaatacaaattacggccaaaac |
217 |
Q |
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| T |
47781835 |
tacaacaccaactatggccaaaac |
47781858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 76 - 217
Target Start/End: Original strand, 47787931 - 47788072
Alignment:
| Q |
76 |
ctacttatgtgacaaaaataacgatagaggcgactacataaccggtagtacctaccataacaacctcaaaatcgctttcatatacctcactttcaactca |
175 |
Q |
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| T |
47787931 |
ctacttttgcgaccaaaataacgatagaggtaactacataaccggtagtgcctacgacaacaacctcaaattcgctatcatgcacctcacttacaactca |
47788030 |
T |
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| Q |
176 |
aaagttaactacggtttctacaatacaaattacggccaaaac |
217 |
Q |
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||| || |||||||||||||||| || || || ||||||||| |
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| T |
47788031 |
aaaattgactacggtttctacaacaccaactatggccaaaac |
47788072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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