View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_low_99 (Length: 230)
Name: NF2272_low_99
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_low_99 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 27 - 205
Target Start/End: Original strand, 11154945 - 11155123
Alignment:
| Q |
27 |
caacagaggaatctgaacttcctggtattccaattgctcctttgaatgaaaataatagcgagaaacaaagtgttatattcattctcgaaaaagcttcttt |
126 |
Q |
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| T |
11154945 |
caacagaggaatctgaacttcctggtattccaattgctcctttaagtgaaaagaataacgagaaacaaagtgttatattcattctcgaaaaagcttcttt |
11155044 |
T |
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| Q |
127 |
agaagtcgctaaagttggcaaggtacgtttttatcgcgcttttattcaattattttaccttatctattcatatatacac |
205 |
Q |
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| T |
11155045 |
agaagtcgctaaagttggcaaggtacgtttttatcgcgcttttattcaattatttgaccttatctattcatatatacac |
11155123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 43952170 - 43951963
Alignment:
| Q |
1 |
tcttcagaacgatgaacaaagtgctccaacagaggaatctgaacttcctggtattccaattgctcctttgaatgaaaataatagcgagaaacaaagtgtt |
100 |
Q |
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|||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||| ||||| |
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| T |
43952170 |
tcttcataacgatgaaccaagtgcgccaacagaggaatctgaacttcctggtattccaattgctcctttgaatgaaaagaacagtgagaaacaaggtgtt |
43952071 |
T |
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| Q |
101 |
atattcattctcgaaaaagcttctttagaagtcgctaaagttggcaaggta----cgtttttatcgcgcttttattcaattattttaccttatctattca |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||| | ||||| |||| | |
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| T |
43952070 |
atattcattctcgaaaaagcttctttagaagtcgctaaagttggcaaggtactttcgtttttatcgtctttttattgaattatttgatcttatttattga |
43951971 |
T |
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| Q |
197 |
tatataca |
204 |
Q |
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|||||||| |
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| T |
43951970 |
tatataca |
43951963 |
T |
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