View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2273_high_19 (Length: 237)
Name: NF2273_high_19
Description: NF2273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2273_high_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 159; Significance: 8e-85; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 34742482 - 34742289
Alignment:
| Q |
1 |
cttaatttcccagcacttagaaagtatgagacattggattgcacttggtcaggtgtgaatagtgttactttaacagtgcctctactttaagtggtttcaa |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34742482 |
cttaatttcccagcaattagaaagtatgagacattggattgcacttggtcaggtgtgaatagtgttactttaagagtgcctctactttaagtggtttcaa |
34742383 |
T |
|
| Q |
101 |
taaagtacacacttagctctcctgagtcccatgttgaaatcaacttttatgcttcgcgcattacaaaattttgttattctggttttacatcggataccat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34742382 |
taaagtacacacttagctctcctgagtctcatgttgaaatcaa-------gtttcgcgcattacaaaattttgttattctggttttacatcggataccat |
34742290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 34751659 - 34751557
Alignment:
| Q |
1 |
cttaatttcccagcacttagaaagtatgagacattggattgcacttggtcag-gtgtgaatagtgttactttaacagtgcctctactttaagtggtttca |
99 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||| || | |||||| ||||| |||||| ||||||||| ||| |||| |||||| |
|
|
| T |
34751659 |
cttaatttcccagctcttagaaagtatgagacattagattgcactt-ttctgaatgtgaagagtgtcactttacaagtgcctctccttgaagttgtttca |
34751561 |
T |
|
| Q |
100 |
ataa |
103 |
Q |
| |
|
|||| |
|
|
| T |
34751560 |
ataa |
34751557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 237
Target Start/End: Complemental strand, 34751525 - 34751423
Alignment:
| Q |
135 |
tgaaatcaacttttatgcttcgcgcattacaaaattttgttattctggttttacatcggataccattatgttagatgcacacagtttagcgtttgctgat |
234 |
Q |
| |
|
|||||| || ||||||||| ||||| || ||||||| ||||||||||||| || || ||||| ||| ||||||| ||||| ||| |||| ||||||||| |
|
|
| T |
34751525 |
tgaaattaagttttatgctacgcgccttgcaaaattctgttattctggttatatgtcagatacaattttgttagaggcacatagtgtagcatttgctgat |
34751426 |
T |
|
| Q |
235 |
att |
237 |
Q |
| |
|
||| |
|
|
| T |
34751425 |
att |
34751423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 34747049 - 34746947
Alignment:
| Q |
1 |
cttaatttcccagcacttagaaagtatgagacattggattgcacttggtcaggtgtgaatagtgttactttaacagtgcctctactttaagtggtttcaa |
100 |
Q |
| |
|
||||||||||||| |||||||||| || |||||| | ||||| || |||||||||||| ||||| | |||| ||| ||||| ||| |||| ||||||| |
|
|
| T |
34747049 |
cttaatttcccagttcttagaaagtttgtgacatttggttgcattttgtcaggtgtgaagagtgtcattttacaagtacctctgcttgaagtagtttcaa |
34746950 |
T |
|
| Q |
101 |
taa |
103 |
Q |
| |
|
||| |
|
|
| T |
34746949 |
taa |
34746947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 34759486 - 34759404
Alignment:
| Q |
1 |
cttaatttcccagcacttagaaagtatgagacattggattgcacttggtcaggtgtgaatagtgttactttaacagtgcctct |
83 |
Q |
| |
|
|||||||||||||| |||||| | ||||||||||| |||||||||| ||| |||||| ||||| | |||| ||||||||| |
|
|
| T |
34759486 |
cttaatttcccagctcttagacattatgagacattagattgcactttttcacatgtgaagagtgtcaatttacaagtgcctct |
34759404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 34746920 - 34746867
Alignment:
| Q |
130 |
catgttgaaatcaacttttatgcttcgcgcattacaaaattttgttattctggt |
183 |
Q |
| |
|
|||| |||||| || |||||||||||||||||| ||| ||||||||||| |||| |
|
|
| T |
34746920 |
catgctgaaattaagttttatgcttcgcgcattgcaacattttgttattatggt |
34746867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University