View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2273_high_22 (Length: 208)
Name: NF2273_high_22
Description: NF2273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2273_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 55271612 - 55271442
Alignment:
| Q |
18 |
taacttttgttagattattgattgcatgcttaaaatacatatataccatcatcatattcatattcatgtcttggatatggttctttcaggttttatactg |
117 |
Q |
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| T |
55271612 |
taacttttgttagattattgattgcatgcttaaaatacata----ccatcatcatattcatattcatgtcttggatatggttctttcaggttttatactg |
55271517 |
T |
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| Q |
118 |
aggctcttgggatgaaacttttgaggcagagagatgttcctgaggagaaatatgccaacgcttttgttggatttg |
192 |
Q |
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| T |
55271516 |
aggctcttgggatgaaacttttgaggcagagagatgttcctgaggagaaatatgccaatgcttttcttggatttg |
55271442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 69 - 198
Target Start/End: Complemental strand, 55265660 - 55265531
Alignment:
| Q |
69 |
tcatattcatattcatgtcttggatatggttctttcaggttttatactgaggctcttgggatgaaacttttgaggcagagagatgttcctgaggagaaat |
168 |
Q |
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| T |
55265660 |
tcatattcatattcatgtcttggatatggttctttcaggttttatactgaggctcttgggatgaaacttttgaggcagagagatgttcctgaggagaaat |
55265561 |
T |
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| Q |
169 |
atgccaacgcttttgttggatttgatgatg |
198 |
Q |
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| T |
55265560 |
atgccaacgcttttgttggatttggtgatg |
55265531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 55265725 - 55265687
Alignment:
| Q |
18 |
taacttttgttagattattgattgcatgcttaaaataca |
56 |
Q |
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| T |
55265725 |
taacttttgttagattattgattgcatgcttaaaataca |
55265687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 103 - 192
Target Start/End: Complemental strand, 8303053 - 8302964
Alignment:
| Q |
103 |
tcaggttttatactgaggctcttgggatgaaacttttgaggcagagagatgttcctgaggagaaatatgccaacgcttttgttggatttg |
192 |
Q |
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| T |
8303053 |
tcaggttttacactgaagcttttggaatgaagcttttgaggaaaagagatgttccagaggagaaatacgccaatgcttttcttggatttg |
8302964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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