View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2273_low_1 (Length: 873)
Name: NF2273_low_1
Description: NF2273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2273_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 417 - 756
Target Start/End: Original strand, 6995478 - 6995817
Alignment:
| Q |
417 |
gaaccgggtttaatttagataacggttcaagggttcagaccttatcttgttcagcaagtgcaagcttatcggcggcttcagaaagcgcagcgtggagagg |
516 |
Q |
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| T |
6995478 |
gaaccgggtttaatttagataacggttcaagggttcagaccttatcttgttcagcaagtgcaagcttatcggcggcttcagaaagagcagcgtggagagg |
6995577 |
T |
|
| Q |
517 |
ctctccctgagcttccagctccgcgatgagctcgtctttcttgacgagctcatcacgtagagcagaaacttctgattggagcgtgttgacacgtgttgaa |
616 |
Q |
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| T |
6995578 |
ctctccctgagcttccagctccgcgatgagctcgtctttcttgacgagctcatcacgtagagcagaaacttctgattggagcgtgttgacacgtgttgaa |
6995677 |
T |
|
| Q |
617 |
agggcaatggaggtgattttgcgagccacatcgagttgctcgaaaggatcggatggtagaacttgcagcaactcctcaggaatatcgaggttcgaaccac |
716 |
Q |
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| T |
6995678 |
agggcaatggaggtgattttgcgagccacatcgagttgctcgaaaggatcggatggtagaacttgcagcaactcctcaggaatatcgaggttcgaaccac |
6995777 |
T |
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| Q |
717 |
tcaattccgccaccaacatgttcttctctcttttttctac |
756 |
Q |
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| T |
6995778 |
tcaattccgccaccaacatgttcttctctcttttttctac |
6995817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 6995063 - 6995399
Alignment:
| Q |
1 |
atttattaaatgaataaatactaatattctcttcctctatttaaaaacattaattcagacatagtcataaacaatattnnnnnnnnnnnnntactaataa |
100 |
Q |
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| T |
6995063 |
atttattaaatgaataaatactaatattctcttcctctatttaaaaacattaattcagacatagtcataaacaatattaaaaaatgaaaaatactaataa |
6995162 |
T |
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| Q |
101 |
caacttacaggtttttcttcatcctcttgaagtgattgcataagtgcctttctgaaaacctccaactgcatattcatattaaaaatacattattacaaga |
200 |
Q |
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| T |
6995163 |
caacttacaggtttttcttcatcctcttgaagtgattgcataagtgcctttctgaaaacctccaactgcatattcatattaaaaatacattattacaaga |
6995262 |
T |
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| Q |
201 |
attaatttaccacttttacaaaaatgaaaattgataattgactaagaaaaccaaatagtttgcaccttggagacatctctactgagcttcctcactgtac |
300 |
Q |
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| T |
6995263 |
attaatttaccacttttacaaaaatgaaaattgataattgactaagaaaaccaaatagtttgcaccttggagacatctctactgagcttcctcactgtac |
6995362 |
T |
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| Q |
301 |
tagaaagtgaagcattctccttcaacaacttctccta |
337 |
Q |
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| T |
6995363 |
tagaaagtgaagcattctccttcaacaacttctccta |
6995399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 49085718 - 49085649
Alignment:
| Q |
102 |
aacttacaggtttttcttcatcctcttgaagtgattgcataagtgcctttctgaaaacctccaactgcat |
171 |
Q |
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| T |
49085718 |
aacttacagaattatcctcatcctcctgaagtgattgcataagcgtctttctgaaaacctctaactgcat |
49085649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 602 - 683
Target Start/End: Complemental strand, 49085276 - 49085195
Alignment:
| Q |
602 |
ttgacacgtgttgaaagggcaatggaggtgattttgcgagccacatcgagttgctcgaaaggatcggatggtagaacttgca |
683 |
Q |
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| T |
49085276 |
ttgacacgtgtcgatagagcaatggatgtgatcttgcgcgctacatcgagttgttcaaatggatctgacggtagtacttgca |
49085195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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