View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2273_low_10 (Length: 320)

Name: NF2273_low_10
Description: NF2273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2273_low_10
NF2273_low_10
[»] chr6 (7 HSPs)
chr6 (31-315)||(4046130-4046414)
chr6 (45-140)||(17404226-17404321)
chr6 (36-140)||(4054742-4054846)
chr6 (204-242)||(14340954-14340992)
chr6 (201-235)||(34404316-34404350)
chr6 (204-241)||(7480265-7480302)
chr6 (206-242)||(4247235-4247271)
[»] chr2 (5 HSPs)
chr2 (202-236)||(32757626-32757660)
chr2 (204-243)||(5752750-5752789)
chr2 (204-242)||(7936922-7936960)
chr2 (202-242)||(32634223-32634263)
chr2 (202-234)||(34005865-34005897)
[»] chr1 (6 HSPs)
chr1 (204-242)||(21516254-21516292)
chr1 (203-244)||(7200991-7201032)
chr1 (201-236)||(16322720-16322755)
chr1 (204-242)||(37230-37268)
chr1 (202-236)||(44936747-44936781)
chr1 (203-236)||(14128628-14128661)
[»] chr8 (2 HSPs)
chr8 (202-242)||(41336796-41336836)
chr8 (206-236)||(44865722-44865752)
[»] chr3 (5 HSPs)
chr3 (202-242)||(24235819-24235859)
chr3 (206-242)||(34857394-34857430)
chr3 (204-242)||(37308216-37308254)
chr3 (204-242)||(50399506-50399544)
chr3 (72-140)||(45865987-45866055)
[»] chr7 (8 HSPs)
chr7 (206-241)||(22388576-22388611)
chr7 (204-235)||(29769052-29769083)
chr7 (204-242)||(657835-657873)
chr7 (204-242)||(30133932-30133970)
chr7 (205-242)||(22388055-22388092)
chr7 (206-242)||(2380226-2380262)
chr7 (204-236)||(7100774-7100806)
chr7 (202-242)||(20476750-20476790)
[»] chr5 (5 HSPs)
chr5 (204-242)||(4855594-4855632)
chr5 (204-242)||(39750020-39750058)
chr5 (198-242)||(8471984-8472028)
chr5 (206-242)||(30585330-30585366)
chr5 (202-242)||(39257537-39257577)
[»] chr4 (4 HSPs)
chr4 (204-233)||(30090138-30090167)
chr4 (204-236)||(4663859-4663891)
chr4 (205-245)||(8422985-8423025)
chr4 (204-244)||(24929374-24929414)


Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 31 - 315
Target Start/End: Complemental strand, 4046414 - 4046130
Alignment:
Q  31 atatatatgttattatggagtatatggaatctggggagctttttgattacatagtagaaaagggtaggttgcacgaagatgaagcgcgcaaattttttca 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4046414 atatatatgttattatggagtatatggaatctggggagctttttgattacatagtagaaaagggtaggttgcacgaagatgaagcgcgcaaattttttca 4046315  T
Q  131 gcaggtataaactctacggatttagattctctccttcgttcttcctacaacatgaatggtggacatttgatcttgtttggataaacaacttaattaaatg 230  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  4046314 gcaggtataaactctacggatttggattctctccttcgttctccctaccacatgaatggtgggcatttgatcctgtttggataaacaacttaattaaatg 4046215  T
Q  231 cttataacataatcagataatctccggggtagagcattgtcacaacaatatggtggctcatagagacttaaagccagaaactata 315  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4046214 cttataccataatcagataatctccggggtacagcattgtcacaacaatatggtggctcatagagacttaaagcctgaaactata 4046130  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 140
Target Start/End: Original strand, 17404226 - 17404321
Alignment:
Q  45 atggagtatatggaatctggggagctttttgattacatagtagaaaagggtaggttgcacgaagatgaagcgcgcaaattttttcagcaggtataa 140  Q
    ||||||||| || ||||||| || |||||||||||||||||||||||||||||| | || ||||||||||| ||||  || || ||||||||||||    
T  17404226 atggagtatgtgaaatctggagaactttttgattacatagtagaaaagggtaggcttcaagaagatgaagctcgcagtttcttccagcaggtataa 17404321  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 140
Target Start/End: Complemental strand, 4054846 - 4054742
Alignment:
Q  36 tatgttattatggagtatatggaatctggggagctttttgattacatagtagaaaagggtaggttgcacgaagatgaagcgcgcaaattttttcagcagg 135  Q
    |||||| | ||||||||| || |||| || ||||| ||||||||||| ||||||||||||||| | || ||||||||||| ||||  || || |||||||    
T  4054846 tatgttgtgatggagtatgtgaaatccggagagctctttgattacattgtagaaaagggtaggctacaagaagatgaagcccgcagtttcttccagcagg 4054747  T
Q  136 tataa 140  Q
    |||||    
T  4054746 tataa 4054742  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 14340992 - 14340954
Alignment:
Q  204 tgtttggataaacaacttaattaaatgcttataacataa 242  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  14340992 tgtttggataaacaacttaattaagtgcttataacataa 14340954  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 235
Target Start/End: Original strand, 34404316 - 34404350
Alignment:
Q  201 tcttgtttggataaacaacttaattaaatgcttat 235  Q
    ||||||||||||||||||||||||||| |||||||    
T  34404316 tcttgtttggataaacaacttaattaagtgcttat 34404350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 7480302 - 7480265
Alignment:
Q  204 tgtttggataaacaacttaattaaatgcttataacata 241  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  7480302 tgtttggataaacaacttagttaagtgcttataacata 7480265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 4247271 - 4247235
Alignment:
Q  206 tttggataaacaacttaattaaatgcttataacataa 242  Q
    |||||||||||||||||||||| |||||||| |||||    
T  4247271 tttggataaacaacttaattaagtgcttatagcataa 4247235  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 32757660 - 32757626
Alignment:
Q  202 cttgtttggataaacaacttaattaaatgcttata 236  Q
    |||||||||||||||||||||||||||||||||||    
T  32757660 cttgtttggataaacaacttaattaaatgcttata 32757626  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 243
Target Start/End: Complemental strand, 5752789 - 5752750
Alignment:
Q  204 tgtttggataaacaacttaattaaatgcttataacataat 243  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  5752789 tgtttggataaacaacttaattaactgcttatagcataat 5752750  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 7936922 - 7936960
Alignment:
Q  204 tgtttggataaacaacttaattaaatgcttataacataa 242  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  7936922 tgtttggataaacaacttaattaagtgcttttaacataa 7936960  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 32634223 - 32634263
Alignment:
Q  202 cttgtttggataaacaacttaattaaatgcttataacataa 242  Q
    |||||||||||||||||||||||| || ||||||| |||||    
T  32634223 cttgtttggataaacaacttaatttaacgcttataccataa 32634263  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 34005865 - 34005897
Alignment:
Q  202 cttgtttggataaacaacttaattaaatgctta 234  Q
    |||||||||||||||||||||||||| ||||||    
T  34005865 cttgtttggataaacaacttaattaagtgctta 34005897  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 21516254 - 21516292
Alignment:
Q  204 tgtttggataaacaacttaattaaatgcttataacataa 242  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  21516254 tgtttggataaacaacttaattaaacgcttataacataa 21516292  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 7201032 - 7200991
Alignment:
Q  203 ttgtttggataaacaacttaattaaatgcttataacataatc 244  Q
    |||||||||||||||||||||||||||| ||||||| |||||    
T  7201032 ttgtttggataaacaacttaattaaatgattataacttaatc 7200991  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 236
Target Start/End: Original strand, 16322720 - 16322755
Alignment:
Q  201 tcttgtttggataaacaacttaattaaatgcttata 236  Q
    ||||||||||||||||||||||||||| ||||||||    
T  16322720 tcttgtttggataaacaacttaattaagtgcttata 16322755  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 37230 - 37268
Alignment:
Q  204 tgtttggataaacaacttaattaaatgcttataacataa 242  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  37230 tgtttcgataaacagcttaattaaatgcttataacataa 37268  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 44936781 - 44936747
Alignment:
Q  202 cttgtttggataaacaacttaattaaatgcttata 236  Q
    ||||| |||||||||||||||||||||||||||||    
T  44936781 cttgtatggataaacaacttaattaaatgcttata 44936747  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Complemental strand, 14128661 - 14128628
Alignment:
Q  203 ttgtttggataaacaacttaattaaatgcttata 236  Q
    ||||||||||||||||||||| ||||||||||||    
T  14128661 ttgtttggataaacaacttaaataaatgcttata 14128628  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 41336836 - 41336796
Alignment:
Q  202 cttgtttggataaacaacttaattaaatgcttataacataa 242  Q
    |||||||||||||||||||||||||| |||||||| |||||    
T  41336836 cttgtttggataaacaacttaattaattgcttatagcataa 41336796  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 236
Target Start/End: Complemental strand, 44865752 - 44865722
Alignment:
Q  206 tttggataaacaacttaattaaatgcttata 236  Q
    |||||||||||||||||||||||||||||||    
T  44865752 tttggataaacaacttaattaaatgcttata 44865722  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 24235859 - 24235819
Alignment:
Q  202 cttgtttggataaacaacttaattaaatgcttataacataa 242  Q
    |||||||||||||||||||||||||| || |||||||||||    
T  24235859 cttgtttggataaacaacttaattaagtgtttataacataa 24235819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 34857394 - 34857430
Alignment:
Q  206 tttggataaacaacttaattaaatgcttataacataa 242  Q
    |||||||||||||||||||||| ||||||||||||||    
T  34857394 tttggataaacaacttaattaagtgcttataacataa 34857430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 37308254 - 37308216
Alignment:
Q  204 tgtttggataaacaacttaattaaatgcttataacataa 242  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  37308254 tgtttggataaacaacttaattaagtgcttatagcataa 37308216  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 50399544 - 50399506
Alignment:
Q  204 tgtttggataaacaacttaattaaatgcttataacataa 242  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  50399544 tgtttggataaacaacttaattaattgcttatagcataa 50399506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 140
Target Start/End: Complemental strand, 45866055 - 45865987
Alignment:
Q  72 tttgattacatagtagaaaagggtaggttgcacgaagatgaagcgcgcaaattttttcagcaggtataa 140  Q
    ||||| ||||||| | |||||||||||||||| ||| | ||||| |||| ||| || ||||||||||||    
T  45866055 tttgactacatagcacaaaagggtaggttgcaagaaaacgaagctcgcacattcttccagcaggtataa 45865987  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 241
Target Start/End: Complemental strand, 22388611 - 22388576
Alignment:
Q  206 tttggataaacaacttaattaaatgcttataacata 241  Q
    ||||||||||||||||||||||| ||||||||||||    
T  22388611 tttggataaacaacttaattaaacgcttataacata 22388576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 235
Target Start/End: Complemental strand, 29769083 - 29769052
Alignment:
Q  204 tgtttggataaacaacttaattaaatgcttat 235  Q
    ||||||||||||||||||||||||||||||||    
T  29769083 tgtttggataaacaacttaattaaatgcttat 29769052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 657873 - 657835
Alignment:
Q  204 tgtttggataaacaacttaattaaatgcttataacataa 242  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  657873 tgtttggataaacaacttaattaagtgcttatcacataa 657835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 30133932 - 30133970
Alignment:
Q  204 tgtttggataaacaacttaattaaatgcttataacataa 242  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  30133932 tgtttggataaacaactcaattaaatgcttatagcataa 30133970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 22388092 - 22388055
Alignment:
Q  205 gtttggataaacaacttaattaaatgcttataacataa 242  Q
    |||||||||||||||||||||||  |||||||||||||    
T  22388092 gtttggataaacaacttaattaagcgcttataacataa 22388055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 2380226 - 2380262
Alignment:
Q  206 tttggataaacaacttaattaaatgcttataacataa 242  Q
    ||||||||||||||||||||||  |||||||||||||    
T  2380226 tttggataaacaacttaattaagcgcttataacataa 2380262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 7100806 - 7100774
Alignment:
Q  204 tgtttggataaacaacttaattaaatgcttata 236  Q
    ||||||||||||| |||||||||||||||||||    
T  7100806 tgtttggataaactacttaattaaatgcttata 7100774  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 20476790 - 20476750
Alignment:
Q  202 cttgtttggataaacaacttaattaaatgcttataacataa 242  Q
    |||||||||||||  ||||||||||||| ||||||||||||    
T  20476790 cttgtttggataattaacttaattaaattcttataacataa 20476750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 4855594 - 4855632
Alignment:
Q  204 tgtttggataaacaacttaattaaatgcttataacataa 242  Q
    |||||||||||||||||||||||||| |||||| |||||    
T  4855594 tgtttggataaacaacttaattaaatacttatagcataa 4855632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 39750020 - 39750058
Alignment:
Q  204 tgtttggataaacaacttaattaaatgcttataacataa 242  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  39750020 tgtttggataaacaacttaattaagtgctcataacataa 39750058  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 8471984 - 8472028
Alignment:
Q  198 tgatcttgtttggataaacaacttaattaaatgcttataacataa 242  Q
    ||||| |||||||||||||||| ||||||||||||| || |||||    
T  8471984 tgatcatgtttggataaacaacgtaattaaatgcttttagcataa 8472028  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 30585330 - 30585366
Alignment:
Q  206 tttggataaacaacttaattaaatgcttataacataa 242  Q
    |||||||||||||||||||||| |||||||| |||||    
T  30585330 tttggataaacaacttaattaattgcttatagcataa 30585366  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 39257577 - 39257537
Alignment:
Q  202 cttgtttggataaacaacttaattaaatgcttataacataa 242  Q
    ||||||||||||||||||||||||||  ||||||| |||||    
T  39257577 cttgtttggataaacaacttaattaagcgcttatagcataa 39257537  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 233
Target Start/End: Original strand, 30090138 - 30090167
Alignment:
Q  204 tgtttggataaacaacttaattaaatgctt 233  Q
    ||||||||||||||||||||||||||||||    
T  30090138 tgtttggataaacaacttaattaaatgctt 30090167  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 4663891 - 4663859
Alignment:
Q  204 tgtttggataaacaacttaattaaatgcttata 236  Q
    ||||||||||||||||||||||||| |||||||    
T  4663891 tgtttggataaacaacttaattaaaagcttata 4663859  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 8423025 - 8422985
Alignment:
Q  205 gtttggataaacaacttaattaaatgcttataacataatca 245  Q
    ||||||||||||||||||||||| || ||||| ||||||||    
T  8423025 gtttggataaacaacttaattaagtgtttatagcataatca 8422985  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 24929374 - 24929414
Alignment:
Q  204 tgtttggataaacaacttaattaaatgcttataacataatc 244  Q
    |||||||||||||||||||||| | || |||||||||||||    
T  24929374 tgtttggataaacaacttaattgagtgtttataacataatc 24929414  T

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