View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2273_low_13 (Length: 252)

Name: NF2273_low_13
Description: NF2273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2273_low_13
NF2273_low_13
[»] chr7 (25 HSPs)
chr7 (1-242)||(23107989-23108231)
chr7 (1-242)||(23313263-23313504)
chr7 (1-143)||(22083202-22083344)
chr7 (99-243)||(3862006-3862151)
chr7 (120-242)||(33312996-33313118)
chr7 (120-242)||(36222431-36222552)
chr7 (120-242)||(23759730-23759852)
chr7 (145-242)||(6967149-6967246)
chr7 (145-242)||(17863241-17863338)
chr7 (165-242)||(36843104-36843181)
chr7 (120-239)||(11279496-11279614)
chr7 (1-73)||(24423214-24423286)
chr7 (164-242)||(46846478-46846556)
chr7 (145-242)||(17866500-17866597)
chr7 (29-82)||(26808524-26808577)
chr7 (165-242)||(9765803-9765880)
chr7 (165-242)||(24783410-24783487)
chr7 (177-242)||(294866-294930)
chr7 (3-82)||(1636702-1636781)
chr7 (3-82)||(5189465-5189544)
chr7 (3-82)||(44672797-44672876)
chr7 (29-82)||(20436931-20436985)
chr7 (1-41)||(1960306-1960346)
chr7 (29-82)||(1633482-1633536)
chr7 (29-67)||(5241963-5242001)
[»] chr1 (23 HSPs)
chr1 (1-242)||(34066346-34066586)
chr1 (92-242)||(16190272-16190421)
chr1 (1-199)||(8435280-8435478)
chr1 (1-242)||(22456496-22456736)
chr1 (103-242)||(1936628-1936770)
chr1 (149-242)||(32506005-32506098)
chr1 (1-81)||(22447952-22448032)
chr1 (1-81)||(22453186-22453266)
chr1 (1-81)||(49148060-49148140)
chr1 (1-189)||(23990138-23990325)
chr1 (1-80)||(17618865-17618944)
chr1 (145-242)||(10764921-10765018)
chr1 (145-242)||(13493264-13493361)
chr1 (99-242)||(39546244-39546388)
chr1 (145-242)||(13495989-13496086)
chr1 (29-82)||(14159092-14159146)
chr1 (1-80)||(3087507-3087585)
chr1 (3-82)||(28138613-28138692)
chr1 (3-82)||(28141863-28141942)
chr1 (3-81)||(25662860-25662938)
chr1 (165-242)||(27282274-27282351)
chr1 (3-82)||(21911049-21911128)
chr1 (1-49)||(34732109-34732157)
[»] chr6 (34 HSPs)
chr6 (16-242)||(16883677-16883903)
chr6 (1-242)||(20527164-20527407)
chr6 (3-199)||(11183841-11184037)
chr6 (1-242)||(12980496-12980736)
chr6 (99-242)||(19664766-19664909)
chr6 (1-143)||(28118050-28118192)
chr6 (1-242)||(12983383-12983623)
chr6 (1-81)||(16731608-16731688)
chr6 (99-240)||(15540574-15540714)
chr6 (103-242)||(32427303-32427441)
chr6 (1-143)||(9313545-9313686)
chr6 (1-82)||(15578674-15578755)
chr6 (99-242)||(15535058-15535200)
chr6 (120-242)||(13017311-13017433)
chr6 (120-242)||(30978333-30978455)
chr6 (1-81)||(20189189-20189269)
chr6 (1-81)||(22146722-22146802)
chr6 (1-82)||(2773164-2773245)
chr6 (120-242)||(22221726-22221845)
chr6 (120-242)||(22247561-22247680)
chr6 (145-242)||(14790620-14790717)
chr6 (145-242)||(14795648-14795745)
chr6 (145-242)||(32704401-32704498)
chr6 (166-242)||(27649104-27649180)
chr6 (165-242)||(1838475-1838552)
chr6 (1-67)||(6514283-6514347)
chr6 (1-67)||(14281289-14281353)
chr6 (1-67)||(28111576-28111640)
chr6 (3-82)||(965025-965104)
chr6 (1-55)||(13005492-13005544)
chr6 (1-63)||(28107524-28107584)
chr6 (1-65)||(5260099-5260161)
chr6 (45-82)||(12747090-12747127)
chr6 (45-82)||(28894281-28894318)
[»] chr8 (19 HSPs)
chr8 (1-245)||(41778746-41778988)
chr8 (1-242)||(13097022-13097267)
chr8 (1-235)||(44008304-44008531)
chr8 (99-232)||(12575400-12575533)
chr8 (1-82)||(12820648-12820730)
chr8 (122-242)||(14418467-14418585)
chr8 (1-82)||(587591-587672)
chr8 (1-82)||(626250-626331)
chr8 (121-199)||(41836317-41836394)
chr8 (1-82)||(27805367-27805449)
chr8 (3-82)||(2847590-2847669)
chr8 (3-82)||(5952392-5952471)
chr8 (1-64)||(45155040-45155101)
chr8 (3-82)||(33383626-33383705)
chr8 (1-67)||(36710408-36710472)
chr8 (191-242)||(41836415-41836466)
chr8 (1-62)||(37681291-37681350)
chr8 (45-82)||(5828308-5828345)
chr8 (2-78)||(12104222-12104298)
[»] chr3 (15 HSPs)
chr3 (3-199)||(50096825-50097020)
chr3 (1-82)||(9155086-9155167)
chr3 (120-242)||(22626434-22626554)
chr3 (121-242)||(39563633-39563754)
chr3 (1-82)||(9158268-9158349)
chr3 (120-242)||(11138692-11138812)
chr3 (165-242)||(13979488-13979565)
chr3 (177-242)||(46731496-46731561)
chr3 (3-82)||(10557812-10557891)
chr3 (1-79)||(18551950-18552028)
chr3 (29-82)||(19194006-19194060)
chr3 (29-82)||(26273320-26273373)
chr3 (1-40)||(10902345-10902384)
chr3 (1-46)||(25260985-25261030)
chr3 (99-194)||(20536436-20536530)
[»] chr5 (20 HSPs)
chr5 (1-143)||(17944838-17944980)
chr5 (107-241)||(11988974-11989108)
chr5 (120-242)||(33575091-33575212)
chr5 (121-242)||(26712465-26712586)
chr5 (121-242)||(26982203-26982324)
chr5 (120-239)||(15532322-15532441)
chr5 (120-239)||(15542504-15542623)
chr5 (1-82)||(13423287-13423368)
chr5 (145-242)||(14616575-14616672)
chr5 (122-242)||(34405850-34405968)
chr5 (35-82)||(35432275-35432322)
chr5 (165-242)||(22159746-22159823)
chr5 (29-82)||(43103690-43103744)
chr5 (1-65)||(18239276-18239340)
chr5 (3-82)||(22036124-22036203)
chr5 (29-82)||(36700726-36700780)
chr5 (3-82)||(22039350-22039429)
chr5 (145-242)||(7650088-7650185)
chr5 (1-78)||(36357021-36357099)
chr5 (45-82)||(33320725-33320762)
[»] chr2 (16 HSPs)
chr2 (99-242)||(23673445-23673588)
chr2 (146-242)||(13710072-13710169)
chr2 (1-143)||(30719992-30720134)
chr2 (122-242)||(40017981-40018099)
chr2 (145-242)||(36326928-36327025)
chr2 (120-242)||(31626551-31626673)
chr2 (122-242)||(16294900-16295019)
chr2 (120-239)||(31528394-31528513)
chr2 (165-242)||(32575851-32575930)
chr2 (3-82)||(16881559-16881638)
chr2 (3-82)||(17039249-17039328)
chr2 (3-82)||(35077182-35077261)
chr2 (3-82)||(35080440-35080519)
chr2 (1-40)||(25138701-25138740)
chr2 (1-40)||(43724002-43724041)
chr2 (1-58)||(5666805-5666858)
[»] scaffold0134 (1 HSPs)
scaffold0134 (1-143)||(7454-7596)
[»] chr4 (21 HSPs)
chr4 (99-242)||(26062792-26062937)
chr4 (1-143)||(24605007-24605148)
chr4 (1-81)||(7394630-7394710)
chr4 (99-242)||(2541886-2542028)
chr4 (1-80)||(26703244-26703323)
chr4 (145-242)||(647350-647447)
chr4 (145-242)||(650622-650719)
chr4 (121-199)||(11649328-11649405)
chr4 (121-202)||(26060653-26060733)
chr4 (1-66)||(2436966-2437031)
chr4 (3-81)||(54900044-54900122)
chr4 (1-66)||(19859274-19859337)
chr4 (1-67)||(53094796-53094862)
chr4 (191-242)||(11649426-11649477)
chr4 (45-132)||(37176867-37176955)
chr4 (1-40)||(49270993-49271032)
chr4 (196-242)||(26060589-26060635)
chr4 (29-72)||(22884195-22884239)
chr4 (29-72)||(22935859-22935903)
chr4 (1-55)||(26060801-26060852)
chr4 (1-41)||(40795321-40795361)
[»] scaffold0440 (1 HSPs)
scaffold0440 (124-242)||(9865-9982)
[»] scaffold0363 (1 HSPs)
scaffold0363 (122-242)||(133-251)
[»] scaffold0264 (1 HSPs)
scaffold0264 (120-242)||(24307-24426)
[»] scaffold0567 (1 HSPs)
scaffold0567 (183-242)||(5995-6054)
[»] scaffold0884 (1 HSPs)
scaffold0884 (3-82)||(4299-4378)
[»] scaffold0996 (1 HSPs)
scaffold0996 (1-67)||(1691-1755)
[»] scaffold0012 (1 HSPs)
scaffold0012 (29-82)||(157363-157417)
[»] scaffold2047 (1 HSPs)
scaffold2047 (29-81)||(570-623)
[»] scaffold1657 (1 HSPs)
scaffold1657 (1-82)||(234-315)
[»] scaffold0352 (1 HSPs)
scaffold0352 (189-242)||(2794-2847)
[»] scaffold0043 (2 HSPs)
scaffold0043 (45-82)||(13873-13910)
scaffold0043 (45-82)||(11530-11567)
[»] scaffold2073 (1 HSPs)
scaffold2073 (1-67)||(636-700)
[»] scaffold0045 (1 HSPs)
scaffold0045 (45-136)||(90344-90436)
[»] scaffold0146 (1 HSPs)
scaffold0146 (29-82)||(36105-36159)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 23108231 - 23107989
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcgnnnnnnntattaaaataa 100  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||||||| |||| |||| ||||||||||||||||||||||         |||||||||    
T  23108231 ttttagcaactgtactaaaaatatatcaaagtaataaaatttataagtttgtatttacatggactgtttcaatttctactcgacaaaagccttaaaataa 23108132  T
Q  101 a-ggatgtatttaattcaagggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagaga 199  Q
    | ||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23108131 aaggatgtatttaattcaaggatgtcctagacagttgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagaga 23108032  T
Q  200 gaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    ||| |||||||||||||||||||||||||||||||||||||||    
T  23108031 gaaatgtggttaagaccttcgaatcatccgaagctctcctatg 23107989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 23313263 - 23313504
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcgnnnnnnntattaaaataa 100  Q
    ||||||||||||||||||||||||||  || ||||||||||||||||||| |||| ||||||||||||||||||||||||||         |||||||||    
T  23313263 ttttagcaagtgtactaaaaatatatcgaaataataaaatttataagttcatatccacagggactgtttcaatttctactcggcataagcgttaaaataa 23313362  T
Q  101 aggatgtatttaattcaagggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagagag 200  Q
    |||||||||| ||||||||||||||||||  | |||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23313363 aggatgtattaaattcaagggtgccctaggtagttgaattgatttttgtaacataaacgaattaaaaacaataaaagaatggttttagaaaattagagag 23313462  T
Q  201 aagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    |||| ||||||||||||| ||||| ||||||| |||||||||    
T  23313463 aagtatggttaagacctttgaatcctccgaagttctcctatg 23313504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 22083202 - 22083344
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcgnnnnnnntattaaaataa 100  Q
    |||||||||||||||||||| |||||  ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||    
T  22083202 ttttagcaagtgtactaaaattatatcgaagcaataaaatttataagttcgtatccacagggactgtttcaatttctactcggcaaaagcattaaaataa 22083301  T
Q  101 aggatgtatttaattcaagggtgccctagacaattgagttgat 143  Q
    ||||| |||| ||||||| |||||||||| || ||||||||||    
T  22083302 aggatatattaaattcaatggtgccctaggcagttgagttgat 22083344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 99 - 243
Target Start/End: Original strand, 3862006 - 3862151
Alignment:
Q  99 aaaggatgtatttaattcaagggtgccctagacaattgagttgatgttt-gtaacataaacgaattaaaaacaataaaagattggttttagaaaattaga 197  Q
    |||||||||||| ||||||| | |||||||| || || | ||||| ||| |||||||||||  ||||||||||||||||||||||||||| |||||||||    
T  3862006 aaaggatgtattaaattcaatgatgccctaggcagttcaattgattttttgtaacataaactgattaaaaacaataaaagattggttttataaaattaga 3862105  T
Q  198 gagaagtgtggttaagaccttcgaatcatccgaagctctcctatgc 243  Q
    ||||||| || |||||||||||||||| | ||||| ||||||||||    
T  3862106 gagaagtatgattaagaccttcgaatccttcgaagttctcctatgc 3862151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 120 - 242
Target Start/End: Complemental strand, 33313118 - 33312996
Alignment:
Q  120 ggtgccctagacaattgagttgatgtttgtaacataaacg-aattaaaaacaataaaagattggttttagaaaattagagagaagtgtggttaagacctt 218  Q
    |||||||||| || |||||||||| ||||||||||||||| ||||||||| |||||| |||||||||||||||||  |||||||   |||||||| ||||    
T  33313118 ggtgccctaggcagttgagttgat-tttgtaacataaacggaattaaaaataataaaggattggttttagaaaatctgagagaaaaatggttaagtcctt 33313020  T
Q  219 cgaatcatccgaagctctcctatg 242  Q
    |||||| || ||||||||||||||    
T  33313019 cgaatcctctgaagctctcctatg 33312996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 120 - 242
Target Start/End: Original strand, 36222431 - 36222552
Alignment:
Q  120 ggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattgg-ttttagaaaattagagagaagtgtggttaagacctt 218  Q
    |||||||||| || |||||||||| ||| ||||||||||  |||||||||||  ||||||||| |||||||| ||| ||||||||| |||||||| ||||    
T  36222431 ggtgccctaggcagttgagttgat-tttctaacataaactgattaaaaacaaagaaagattggtttttagaagatt-gagagaagtatggttaagtcctt 36222528  T
Q  219 cgaatcatccgaagctctcctatg 242  Q
    |||||| ||||||| |||||||||    
T  36222529 cgaatcctccgaagttctcctatg 36222552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 242
Target Start/End: Original strand, 23759730 - 23759852
Alignment:
Q  120 ggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggtttt--agaaaattagagagaagtgtggttaagacct 217  Q
    |||||||||| || |||||||||| || |||||||||||  |||||||||||||||  |||||||||  |||||||  ||||||||| |||||||| |||    
T  23759730 ggtgccctaggcagttgagttgat-ttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatc-gagagaagtatggttaagtcct 23759827  T
Q  218 tcgaatcatccgaagctctcctatg 242  Q
    ||||||| ||| |||||||||||||    
T  23759828 tcgaatcctccaaagctctcctatg 23759852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 145 - 242
Target Start/End: Complemental strand, 6967246 - 6967149
Alignment:
Q  145 tttgtaacataaacgaattaaaaacaataaaagattggtttt-agaaaattagagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    ||||||||||||||| |   ||||||||||||| |||||||| |||| ||||||||||||| ||||||||||||||||||| || |||| |||||||||    
T  6967246 tttgtaacataaacgtaaataaaacaataaaag-ttggttttcagaatattagagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 6967149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 145 - 242
Target Start/End: Original strand, 17863241 - 17863338
Alignment:
Q  145 tttgtaacataaacgaattaaaaacaataaaagattggtttt-agaaaattagagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    ||||||||||||||| |   ||||||||||||| |||||||| |||| ||||||||||||| ||||||||||||||||||| || |||| |||||||||    
T  17863241 tttgtaacataaacgtaaataaaacaataaaag-ttggttttcagaatattagagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 17863338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 165 - 242
Target Start/End: Original strand, 36843104 - 36843181
Alignment:
Q  165 aaaacaataaaagattggtttta-gaaaattagagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    ||||||||||||| ||||||||| ||| ||||||||||||| ||||||||||||||||||| ||||||| |||||||||    
T  36843104 aaaacaataaaag-ttggttttatgaatattagagagaagtatggttaagaccttcgaatcctccgaagttctcctatg 36843181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 239
Target Start/End: Complemental strand, 11279614 - 11279496
Alignment:
Q  120 ggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattgg-ttttagaaaattagagagaagtgtggttaagacctt 218  Q
    |||||||||| || |||||||||| ||||||||||||||  ||||||||| |  ||||||||| |||||||| ||| ||||||||| |||||||| ||||    
T  11279614 ggtgccctaggcagttgagttgat-tttgtaacataaactgattaaaaacgaataaagattggtttttagaagatt-gagagaagtatggttaagtcctt 11279517  T
Q  219 cgaatcatccgaagctctcct 239  Q
    |||||| | ||||| ||||||    
T  11279516 cgaatctttcgaagttctcct 11279496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 24423214 - 24423286
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaat 73  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||| || ||| | | |||||||||    
T  24423214 ttttagcaagtgtactaaaaatacattgaagtaataaaatttataagttcgtctccacatgaattgtttcaat 24423286  T

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Target: chr7; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 46846478 - 46846556
Alignment:
Q  164 aaaaacaataaaagattgg-ttttagaaaattagagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    ||||||||||||||||||| |||||||||||| ||||||||| |||||||| |||||||||| ||||||| ||| |||||    
T  46846478 aaaaacaataaaagattggtttttagaaaatt-gagagaagtatggttaagtccttcgaatcctccgaagttcttctatg 46846556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 242
Target Start/End: Original strand, 17866500 - 17866597
Alignment:
Q  145 tttgtaacataaacgaattaaaaacaataaaagattggtttt-agaaaattagagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    ||||||||||||||| |   ||||||||||||| |||||||| |||| ||||||||||||| ||||| ||||||||||||| || |||| |||||||||    
T  17866500 tttgtaacataaacgtaaataaaacaataaaag-ttggttttcagaatattagagagaagtatggtttagaccttcgaatcctctgaagttctcctatg 17866597  T

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Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 26808524 - 26808577
Alignment:
Q  29 aagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcg 82  Q
    |||||||||| |||||||||||||||| |||| |||||||||||||||||||||    
T  26808524 aagtaataaattttataagttcgtatccacagagactgtttcaatttctactcg 26808577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 9765880 - 9765803
Alignment:
Q  165 aaaacaataaaagattggtttta-gaaaattagagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    |||| |||||||| ||||||||| ||| ||||||||||||| ||||||||||||||||||| || |||| |||||||||    
T  9765880 aaaataataaaag-ttggttttaagaatattagagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 9765803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 24783487 - 24783410
Alignment:
Q  165 aaaacaataaaagattggtttta-gaaaattagagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    ||||||||||||| ||||||||| ||| ||||||||||||| ||||||||||||| ||||| ||||||| |||| ||||    
T  24783487 aaaacaataaaag-ttggttttaagaatattagagagaagtatggttaagacctttgaatcctccgaagttctcatatg 24783410  T

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Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 294930 - 294866
Alignment:
Q  177 gattggttttagaaaattagagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    |||||||||||||||||| ||||||||| |||||||| | |||||||| ||||||| |||||||||    
T  294930 gattggttttagaaaatt-gagagaagtatggttaagtctttcgaatcctccgaagttctcctatg 294866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 1636702 - 1636781
Alignment:
Q  3 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||||||||   |||||  ||||||||||||||||||| ||||| || |||||||||||||||| |||||||||    
T  1636702 ttagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtttccacagggactgtttcaacttctactcg 1636781  T

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Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 5189465 - 5189544
Alignment:
Q  3 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||||||||   |||||  |||||||||| |||||||| |||||||| |||||||||||||||| |||||||||    
T  5189465 ttagcaagtgtactaact-tatatcgaagtaataaactttataagattcgtatccacagggactgtttcaacttctactcg 5189544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 44672797 - 44672876
Alignment:
Q  3 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||||||||   |||||  ||||||||||||||||||| ||||| || |||||||||||||||| |||||||||    
T  44672797 ttagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtttccacagggactgtttcaacttctactcg 44672876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 20436985 - 20436931
Alignment:
Q  29 aagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||||||||||  |||||||| |||| |||||||||||||||||||||    
T  20436985 aagtaataaaatttataacattcgtatccacagagactgtttcaatttctactcg 20436931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 1960346 - 1960306
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatt 41  Q
    ||||||||||||||||||||||||||  |||||||||||||    
T  1960346 ttttagcaagtgtactaaaaatatatcaaagtaataaaatt 1960306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 1633482 - 1633536
Alignment:
Q  29 aagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||||||||||| ||||| || | |||||||||||||| |||||||||    
T  1633482 aagtaataaaatttataagattcgtttccaaagggactgtttcaacttctactcg 1633536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 5241963 - 5242001
Alignment:
Q  29 aagtaataaaatttataagttcgtatctacagggactgt 67  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  5241963 aagtaataaaatttataagtttgtatccacagggactgt 5242001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 34066586 - 34066346
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcgnnnnnnntattaaaataa 100  Q
    |||||| ||||||||||||| |||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||         |||||||||    
T  34066586 ttttagtaagtgtactaaaa-tatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctactcggaaaaaactttaaaataa 34066488  T
Q  101 aggatgtatttaattcaagggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagagag 200  Q
    |||||||||| |||||||||||||||||| || |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34066487 aggatgtattaaattcaagggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagagag 34066388  T
Q  201 aagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    |||| ||||||||||||||||||| ||||||| |||||||||    
T  34066387 aagtatggttaagaccttcgaatcctccgaagttctcctatg 34066346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 92 - 242
Target Start/End: Original strand, 16190272 - 16190421
Alignment:
Q  92 ttaaaataaaggatgtatttaattcaagggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggttttagaaa 191  Q
    ||||||||||||||||||| ||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  16190272 ttaaaataaaggatgtattaaattcaatggtgccctaggaaattgagttgatgtttgtaacataaacgaattaaaaacaat-aaagattggttttagaaa 16190370  T
Q  192 attagagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    |||| |||||||| ||||||||||||||||||| ||||||| |||||||||    
T  16190371 attaaagagaagtatggttaagaccttcgaatcctccgaagttctcctatg 16190421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 8435478 - 8435280
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcgnnnnnnntattaaaataa 100  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||          |||||||||    
T  8435478 ttttagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgcatccacatggactgtttcaatttctactctgcaaaagcgttaaaataa 8435379  T
Q  101 aggatgtatttaattcaagggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagaga 199  Q
    |||||||||| |||||||| ||||||||| || |||||||||| ||||||||||||||  | ||||||||||||||| | | |||||||||||||||||    
T  8435378 aggatgtattaaattcaagagtgccctaggcagttgagttgatttttgtaacataaacataataaaaacaataaaagttggtttttagaaaattagaga 8435280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 22456496 - 22456736
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcgnnnnnnntattaaaataa 100  Q
    ||||||||||||||||||||||| ||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||           ||||||||    
T  22456496 ttttagcaagtgtactaaaaataaatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctactcagcaaaaacgataaaataa 22456595  T
Q  101 aggatgtatttaattc-aagggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagaga 199  Q
    |||||||||| ||||| || | |||| ||| || |||  ||| | ||| ||| |||||| | |||||||| ||||||| |||||| | | |||||| |||    
T  22456596 aggatgtattaaattcaaaagttgccataggcagttggattggtttttataa-ataaactatttaaaaacgataaaagcttggttct-ggaaattaaaga 22456693  T
Q  200 gaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    |||   |||| |||||||||||||| ||||||| |||||||||    
T  22456694 gaaaaatggtcaagaccttcgaatcctccgaagttctcctatg 22456736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 103 - 242
Target Start/End: Complemental strand, 1936770 - 1936628
Alignment:
Q  103 gatgtatttaattcaaggg--tgccctagacaattgagttgatgtttgtaacataaac-gaattaaaaacaataaaagattggttttagaaaattagaga 199  Q
    |||||||| ||||||| ||  || ||||| || ||||||||||  ||||| ||||||| |||||||||||  |||||  |||||||||||||||||||||    
T  1936770 gatgtattaaattcaatgggttgacctaggcagttgagttgattgttgtatcataaactgaattaaaaacggtaaaattttggttttagaaaattagaga 1936671  T
Q  200 gaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    ||||| ||||||||||||||||||| ||||||| |||||||||    
T  1936670 gaagtatggttaagaccttcgaatcctccgaagttctcctatg 1936628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 149 - 242
Target Start/End: Original strand, 32506005 - 32506098
Alignment:
Q  149 taacataaacgaattaaaaacaataaaagattggtttt-agaaaattagagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    ||||||||||||||||||||||||||||| |||||||| |||| |||| |||||||||||||||||||||||||||| ||||||| |||||||||    
T  32506005 taacataaacgaattaaaaacaataaaag-ttggttttaagaatattatagagaagtgtggttaagaccttcgaatcctccgaagttctcctatg 32506098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 22447952 - 22448032
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactc 81  Q
    ||||||||||||||||||||||| ||  |||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  22447952 ttttagcaagtgtactaaaaataaatcgaagtaataaaatttataagttcatatccacagggactgtttcaatttctactc 22448032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 22453186 - 22453266
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactc 81  Q
    ||||||||||||||||||||||| ||  |||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  22453186 ttttagcaagtgtactaaaaataaatcgaagtaataaaatttataagttcatatccacagggactgtttcaatttctactc 22453266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 49148140 - 49148060
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactc 81  Q
    |||||| |||||||||||||||| ||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  49148140 ttttagtaagtgtactaaaaataaatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctactc 49148060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 23990138 - 23990325
Alignment:
Q  1 ttttagcaagtgtactaaaaa-tatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcgnnnnnnntattaaaata 99  Q
    ||||||||||||||||||||| |||||  ||||||| |||||||||||||||||||  |||| ||| |||||||||| | | |         ||||||||    
T  23990138 ttttagcaagtgtactaaaaaatatatcgaagtaatcaaatttataagttcgtatc--caggaactatttcaatttcaaattggaaaaagcgttaaaata 23990235  T
Q  100 aaggatgtatttaattcaagggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggttttaga 189  Q
    ||||||||||| ||||||    ||| |||| || ||||||| || ||||||||||| ||| ||||||||||||||||||| |||||||||    
T  23990236 aaggatgtattaaattcagtaatgctctaggcagttgagttaatttttgtaacatatacggattaaaaacaataaaagataggttttaga 23990325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 17618865 - 17618944
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctact 80  Q
    ||||||||| ||||||||||||||||  |||||||||||||||||||||| |||  ||||||||||||||||||||||||    
T  17618865 ttttagcaaatgtactaaaaatatatcgaagtaataaaatttataagttcatattcacagggactgtttcaatttctact 17618944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 145 - 242
Target Start/End: Complemental strand, 10765018 - 10764921
Alignment:
Q  145 tttgtaacataaacgaattaaaaacaataaaagattggtttt-agaaaattagagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    ||||||||||||||| |   ||||||||||||| |||||||| |||| ||||||||||||| ||||||||||||||||||| || |||| |||||||||    
T  10765018 tttgtaacataaacgtaaataaaacaataaaag-ttggttttcagaatattagagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 10764921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 145 - 242
Target Start/End: Complemental strand, 13493361 - 13493264
Alignment:
Q  145 tttgtaacataaacgaattaaaaacaataaaagattggtttt-agaaaattagagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    ||||||||||||||| |   ||||||||||||| |||||||| |||| ||||||||||||| ||||||||||||||||||| || |||| |||||||||    
T  13493361 tttgtaacataaacgtaaataaaacaataaaag-ttggttttcagaatattagagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 13493264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 242
Target Start/End: Complemental strand, 39546388 - 39546244
Alignment:
Q  99 aaaggatgtatttaattcaagggt-gccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggttttagaaa-attag 196  Q
    |||||||||||| |||||||  || ||||||| || |||  ||| | |||||||| |||||| |   ||||||||||||| ||||||||| ||| |||||    
T  39546388 aaaggatgtattaaattcaattgttgccctaggcagttggattggtttttgtaacgtaaacgcaaataaaacaataaaag-ttggttttaaaaatattag 39546290  T
Q  197 agagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    |||||||| ||||||||||||||||||| ||||||| |||| ||||    
T  39546289 agagaagtatggttaagaccttcgaatcctccgaagttctcatatg 39546244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 242
Target Start/End: Complemental strand, 13496086 - 13495989
Alignment:
Q  145 tttgtaacataaacgaattaaaaacaataaaagattggtttta-gaaaattagagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    ||||||||||||||| |   ||||||||||||| ||| ||||| ||| ||||||||||||| ||||||||||||| ||||| ||||||| |||||||||    
T  13496086 tttgtaacataaacgtaaataaaacaataaaag-ttgattttaagaatattagagagaagtatggttaagacctttgaatcctccgaagttctcctatg 13495989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 14159092 - 14159146
Alignment:
Q  29 aagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  14159092 aagtaataaaatttataagattcgtatctacagggactgtttcaacttctactcg 14159146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 3087507 - 3087585
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctact 80  Q
    ||||| |||||||||||||| |||||  ||||||||||||||||||||| |||||  |||| ||||||| ||||||||||    
T  3087507 ttttaacaagtgtactaaaa-tatatcgaagtaataaaatttataagtttgtatccgcaggaactgttttaatttctact 3087585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 28138613 - 28138692
Alignment:
Q  3 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||||||||   |||||  ||||||||||||||||||| ||||| || |||||||||||||||| |||||||||    
T  28138613 ttagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtttccacagggactgtttcaacttctactcg 28138692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 28141863 - 28141942
Alignment:
Q  3 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||||||||   |||||  ||||||||||||||||||| ||||| || |||||||||||||||| |||||||||    
T  28141863 ttagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtttccacagggactgtttcaacttctactcg 28141942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 25662860 - 25662938
Alignment:
Q  3 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactc 81  Q
    ||||||||||||||||   |||||  ||||||||||||||||||| |||||||| ||| |||||||||||| ||||||||    
T  25662860 ttagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtatccacatggactgtttcaacttctactc 25662938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 242
Target Start/End: Original strand, 27282274 - 27282351
Alignment:
Q  165 aaaacaataaaagattggtttta-gaaaattagagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    |||||||| ||| |||||||||| ||| ||||||||||||| |||||||||| |||||||  ||||||| |||||||||    
T  27282274 aaaacaattaaa-attggttttatgaatattagagagaagtatggttaagactttcgaattctccgaagttctcctatg 27282351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 21911049 - 21911128
Alignment:
Q  3 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||||||||   |||||  ||| |||||||||| |||| |||||||| ||| |||||||||||| |||||||||    
T  21911049 ttagcaagtgtactaact-tatatcgaagaaataaaatttgtaagattcgtatccacatggactgtttcaacttctactcg 21911128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34732109 - 34732157
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagtt 49  Q
    ||||||||||||||||||||||  |   |||||||||||||||||||||    
T  34732109 ttttagcaagtgtactaaaaatgaaccgaagtaataaaatttataagtt 34732157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 16883903 - 16883677
Alignment:
Q  16 taaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcgnnnnnnntattaaaataaaggatgtatttaatt 115  Q
    |||||||||||  |||||||||||||||||||||||||||  |||||||||||||||||||||||||         ||||||||||||||||||| ||||    
T  16883903 taaaaatatatcgaagtaataaaatttataagttcgtatccgcagggactgtttcaatttctactcggtaaaagcgttaaaataaaggatgtattaaatt 16883804  T
Q  116 caagggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagagagaagtgtggttaagac 215  Q
    ||||||| |||||| || |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16883803 caagggttccctaggcagttgaattgatttttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagagagaagtatggttaagac 16883704  T
Q  216 cttcgaatcatccgaagctctcctatg 242  Q
     |||||||| | ||||| |||||||||    
T  16883703 attcgaatccttcgaagttctcctatg 16883677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 20527164 - 20527407
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcgnnnnnnntattaaaataa 100  Q
    ||||||||||||||||| ||||||||  ||||||||||||||||||||||||||| |||||||||||||| |||||||||||         |||||||||    
T  20527164 ttttagcaagtgtactacaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcgatttctactcgataaaagcgttaaaataa 20527263  T
Q  101 aggatgtatttaattcaagggt-gccctagacaattgagttgatgtttgtaacataaacg-aattaaaaacaataaaagattggtttt-agaaaattaga 197  Q
    | |||||||| ||||||| ||| ||||||| || |||| ||||| |||||||| |||||  || ||||||||||||||| |||||||| |||| ||||||    
T  20527264 atgatgtattaaattcaaaggttgccctaggcagttgaattgatttttgtaacgtaaacataaataaaaacaataaaag-ttggttttaagaatattaga 20527362  T
Q  198 gagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    ||||||| ||||||||||||||||||| ||||||| |||||||||    
T  20527363 gagaagtatggttaagaccttcgaatcctccgaagttctcctatg 20527407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 3 - 199
Target Start/End: Original strand, 11183841 - 11184037
Alignment:
Q  3 ttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcgnnnnnnntattaaaataaag 102  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||| |||| |||||||||||||||||||||||| |         |||||||||||    
T  11183841 ttagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcatatccacagggactgtttcaatttctacttggaaaaaacgttaaaataaag 11183940  T
Q  103 gatgtatttaattcaagggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagaga 199  Q
    |||||||| |||||||| || |||||| || |||||||||| ||||||||||||||| | ||||||||||||||| | | |||||||||||||||||    
T  11183941 gatgtattaaattcaagagttccctaggcagttgagttgatttttgtaacataaacgtaataaaaacaataaaagttggtttttagaaaattagaga 11184037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 12980496 - 12980736
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcgnnnnnnntattaaaataa 100  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||          |||||||||    
T  12980496 ttttagcaagtgtactaaaaataaattgaagtaataaaatttataagttcgtatccacatggactgtttcaatttctactcagcaaaaacgttaaaataa 12980595  T
Q  101 aggatgtatttaattc-aagggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagaga 199  Q
    |||||||||| ||||| || | |||||||| || |||  ||| | ||| ||| |||||| | |||||||| ||||||| |||||| | |||||||| |||    
T  12980596 aggatgtattaaattctaaagttgccctaggcagttggattggtttttataa-ataaactatttaaaaacgataaaagcttggttct-gaaaattaaaga 12980693  T
Q  200 gaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    |||   |||| |||||||||||||| ||||||| |||||||||    
T  12980694 gaaaaatggtcaagaccttcgaatcctccgaagttctcctatg 12980736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 99 - 242
Target Start/End: Original strand, 19664766 - 19664909
Alignment:
Q  99 aaaggatgtatttaattcaagggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagag 198  Q
    |||||||||||| ||||||||| |||||||| || |||  ||| | ||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||||    
T  19664766 aaaggatgtattaaattcaaggttgccctaggcagttggattggtatttgtaaaataaacggattaaaaacaataaaagtttggtttaagaaaattagag 19664865  T
Q  199 agaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    ||| || ||||||||||||||||||| ||||||| |||||||||    
T  19664866 agatgtatggttaagaccttcgaatcctccgaagttctcctatg 19664909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 28118192 - 28118050
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcgnnnnnnntattaaaataa 100  Q
    |||||||||||||| |||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||         |||||||||    
T  28118192 ttttagcaagtgtattaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctactcggcaaaagcgttaaaataa 28118093  T
Q  101 aggatgtatttaattcaagggtgccctagacaattgagttgat 143  Q
    ||||| |||| ||||||| |||||||||| || ||||||||||    
T  28118092 aggatatattaaattcaatggtgccctaggcagttgagttgat 28118050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 12983383 - 12983623
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcgnnnnnnntattaaaataa 100  Q
    ||||||||||||||||||||||| ||  ||||||||||||||||||||||||||| |||||| ||||||||||||||||||          |||||||||    
T  12983383 ttttagcaagtgtactaaaaataaatcgaagtaataaaatttataagttcgtatccacaggggctgtttcaatttctactcagcaaaaacgttaaaataa 12983482  T
Q  101 aggatgtatttaattc-aagggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagaga 199  Q
    |||||||||| ||||| || | |||||||| || |||  ||| | ||| ||| |||||| | |||||||| ||||||| |||||| | | |||||| |||    
T  12983483 aggatgtattaaattcaaatgttgccctaggcagttggattggtttttataa-ataaactatttaaaaacgataaaagcttggttct-ggaaattaaaga 12983580  T
Q  200 gaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    |||   |||| |||||||||||||| ||||||| |||||||||    
T  12983581 gaaaaatggtcaagaccttcgaatcctccgaagttctcctatg 12983623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 16731688 - 16731608
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactc 81  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16731688 ttttagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctactc 16731608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 99 - 240
Target Start/End: Complemental strand, 15540714 - 15540574
Alignment:
Q  99 aaaggatgtatttaattcaagggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagag 198  Q
    |||||||||||| ||||||||| | |||||| || |||||||||| ||| ||| ||||| | ||||||||||||||||| || |||||||||||||| ||    
T  15540714 aaaggatgtattaaattcaaggtttccctaggcagttgagttgat-tttctaaaataaagggattaaaaacaataaaagtttagttttagaaaattaaag 15540616  T
Q  199 agaagtgtggttaagaccttcgaatcatccgaagctctccta 240  Q
    |||  | ||||||||||||||||||| ||||||| |||||||    
T  15540615 agatttatggttaagaccttcgaatcctccgaagttctccta 15540574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 103 - 242
Target Start/End: Complemental strand, 32427441 - 32427303
Alignment:
Q  103 gatgtatttaattcaagggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagagagaa 202  Q
    |||||||| ||||||||| |||||||| || |||  ||| | ||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||     
T  32427441 gatgtattaaattcaaggttgccctag-cagttggattggtatttgtaaaataaacgaattaaaaacaatgaaagtttggttttagaaaattagagagat 32427343  T
Q  203 gtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    || || |||||||||| ||||| || |||| |||||||||    
T  32427342 gtttgattaagacctttgaatcctctgaagttctcctatg 32427303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 9313545 - 9313686
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcgnnnnnnntattaaaataa 100  Q
    ||||| ||||||||||||||||||||  ||||||||||||||||||||||||||| ||| |||||||||||||||||||||          |||||||||    
T  9313545 ttttaacaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacaaggactgtttcaatttctactcagcaaaagcgttaaaataa 9313644  T
Q  101 aggatgtatttaattcaagggtgccctagacaattgagttgat 143  Q
    ||||| |||| ||||||| || ||||||| || ||||||||||    
T  9313645 aggatatattaaattcaatgg-gccctaggcagttgagttgat 9313686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 15578674 - 15578755
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcg 82  Q
    |||||||||||||| |||||||||||  ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15578674 ttttagcaagtgtattaaaaatatatcgaaggaataaaatttataagttcgtatctacagggactatttcaatttctactcg 15578755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 99 - 242
Target Start/End: Complemental strand, 15535200 - 15535058
Alignment:
Q  99 aaaggatgtatttaattcaagggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagag 198  Q
    |||||||||||| ||||||||| |||||||| || |||||||||| ||||||| | |||   ||||||||||||||||| ||||||||| ||||||| ||    
T  15535200 aaaggatgtattaaattcaaggttgccctaggcagttgagttgat-tttgtaaaacaaatagattaaaaacaataaaagtttggttttacaaaattaaag 15535102  T
Q  199 agaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
     || || |||||||||||||| |||| ||||||| | |||||||    
T  15535101 tgatgtatggttaagaccttcaaatcctccgaagttttcctatg 15535058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 120 - 242
Target Start/End: Original strand, 13017311 - 13017433
Alignment:
Q  120 ggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggtttt--agaaaattagagagaagtgtggttaagacct 217  Q
    |||||||||| || |||||||||| || |||||||||||  |||||||||||||||  |||||||||  |||||||| ||||||||| |||||||| |||    
T  13017311 ggtgccctaggcagttgagttgat-ttagtaacataaactgattaaaaacaataaagaattggtttttcagaaaatt-gagagaagtatggttaagtcct 13017408  T
Q  218 tcgaatcatccgaagctctcctatg 242  Q
    ||||||| ||| |||||||||||||    
T  13017409 tcgaatcctccaaagctctcctatg 13017433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 120 - 242
Target Start/End: Original strand, 30978333 - 30978455
Alignment:
Q  120 ggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggtttt--agaaaattagagagaagtgtggttaagacct 217  Q
    |||||||||| || |||||||||| || |||||||||||  |||||||||||||||  |||||||||  |||||||| ||||||||| |||||||| |||    
T  30978333 ggtgccctaggcagttgagttgat-ttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagagaagtatggttaagtcct 30978430  T
Q  218 tcgaatcatccgaagctctcctatg 242  Q
    ||||||| ||| |||||||||||||    
T  30978431 tcgaatcctccaaagctctcctatg 30978455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 20189189 - 20189269
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactc 81  Q
    |||||||||||||| |||||||||||  ||||||||||||||||||||||||||||| ||  ||||||||||||| |||||    
T  20189189 ttttagcaagtgtattaaaaatatatcgaagtaataaaatttataagttcgtatctatagaaactgtttcaatttatactc 20189269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 22146802 - 22146722
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactc 81  Q
    |||||||||||||| |||||||||||  ||||||||||||||||||||||||||||| ||  ||||||||||||| |||||    
T  22146802 ttttagcaagtgtattaaaaatatatcgaagtaataaaatttataagttcgtatctatagaaactgtttcaatttatactc 22146722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 2773164 - 2773245
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||||||||||||||  ||  |||||||| |||||||||||||||||| || |||| ||||||||||||||||||    
T  2773164 ttttagcaagtgtactaaaaatgaatcgaagtaatataatttataagttcgtatccactgggattgtttcaatttctactcg 2773245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 242
Target Start/End: Complemental strand, 22221845 - 22221726
Alignment:
Q  120 ggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggtttt-agaaaattagagagaagtgtggttaagacctt 218  Q
    |||||||||| || |||||||||| || ||||  ||||| ||||||||||||||||  ||||||||| |||||||| ||||||||  |||||||| ||||    
T  22221845 ggtgccctaggcagttgagttgat-ttagtaa--taaactaattaaaaacaataaagaattggtttttagaaaatt-gagagaagcatggttaagtcctt 22221750  T
Q  219 cgaatcatccgaagctctcctatg 242  Q
    |||||| |||||||||||||||||    
T  22221749 cgaatcctccgaagctctcctatg 22221726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 242
Target Start/End: Complemental strand, 22247680 - 22247561
Alignment:
Q  120 ggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggtttt-agaaaattagagagaagtgtggttaagacctt 218  Q
    |||||||||| || |||||||||| || ||||  ||||| ||||||||||||||||  ||||||||| |||||||| ||||||||  |||||||| ||||    
T  22247680 ggtgccctaggcagttgagttgat-ttagtaa--taaactaattaaaaacaataaagaattggtttttagaaaatt-gagagaagcatggttaagtcctt 22247585  T
Q  219 cgaatcatccgaagctctcctatg 242  Q
    |||||| |||||||||||||||||    
T  22247584 cgaatcctccgaagctctcctatg 22247561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 145 - 242
Target Start/End: Complemental strand, 14790717 - 14790620
Alignment:
Q  145 tttgtaacataaacgaattaaaaacaataaaagattggtttt-agaaaattagagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    ||||||||||||||| |   ||||||||||||| |||||||| |||| ||||||||||||| ||||||||||||||||||| || |||| |||||||||    
T  14790717 tttgtaacataaacgtaaataaaacaataaaag-ttggttttcagaatattagagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 14790620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 145 - 242
Target Start/End: Complemental strand, 14795745 - 14795648
Alignment:
Q  145 tttgtaacataaacgaattaaaaacaataaaagattggtttt-agaaaattagagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    ||||||||||||||| |   ||||||||||||| |||||||| |||| ||||||||||||| ||||||||||||||||||| || |||| |||||||||    
T  14795745 tttgtaacataaacgtaaataaaacaataaaag-ttggttttcagaatattagagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 14795648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 145 - 242
Target Start/End: Original strand, 32704401 - 32704498
Alignment:
Q  145 tttgtaacataaacgaattaaaaacaataaaagattggtttt-agaaaattagagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    ||||||||||||||| |   ||||||||||||| |||||||| |||| ||||||||||||| ||||||||||||||||||| || |||| |||||||||    
T  32704401 tttgtaacataaacgtaaataaaacaataaaag-ttggttttcagaatattagagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 32704498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 27649180 - 27649104
Alignment:
Q  166 aaacaataaaagattggtttta-gaaaattagagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    |||||||||||| ||||||||| ||||||||||| ||||| ||||||||||||||||||| ||||||| |||||||||    
T  27649180 aaacaataaaag-ttggttttaagaaaattagagcgaagtatggttaagaccttcgaatcctccgaagttctcctatg 27649104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 1838552 - 1838475
Alignment:
Q  165 aaaacaataaaagattggtttta-gaaaattagagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    |||| |||||||| ||||||||| ||| ||||||||||||| ||||||||||||||||||| ||||||| |||||||||    
T  1838552 aaaagaataaaag-ttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccgaagttctcctatg 1838475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 6514347 - 6514283
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgt 67  Q
    |||||||||||||||||||| |||    ||||||||||||||||||||||||||||||| |||||||    
T  6514347 ttttagcaagtgtactaaaactatcg--aagtaataaaatttataagttcgtatctacaaggactgt 6514283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 14281289 - 14281353
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgt 67  Q
    |||||||||||||||||||| ||||   ||||||||||||||||||||| ||||| |||| ||||||    
T  14281289 ttttagcaagtgtactaaaactatag--aagtaataaaatttataagtttgtatccacagagactgt 14281353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 28111576 - 28111640
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgt 67  Q
    |||||||||||||||||||| |||    ||||||||||||||||||||||||||| ||| |||||||    
T  28111576 ttttagcaagtgtactaaaactatcg--aagtaataaaatttataagttcgtatccacatggactgt 28111640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 965104 - 965025
Alignment:
Q  3 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||||||||   |||||  ||||||||||||||||||  |||||||  |||||||||||||||| |||||||||    
T  965104 ttagcaagtgtactaact-tatatcgaagtaataaaatttataaaattcgtattcacagggactgtttcaacttctactcg 965025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 13005544 - 13005492
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatc 55  Q
    |||||||||||||||||||| |||    |||||||||||||||||||||||||||    
T  13005544 ttttagcaagtgtactaaaactatcg--aagtaataaaatttataagttcgtatc 13005492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 28107524 - 28107584
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacaggga 63  Q
    ||||| |||||||||||||| |||    ||||||||||||||||||||||||||| |||||||    
T  28107524 ttttaacaagtgtactaaaactatcg--aagtaataaaatttataagttcgtatccacaggga 28107584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 5260161 - 5260099
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggact 65  Q
    ||||||||| |||||||||| |||    ||||||||||||||||||||||||||| ||| |||||    
T  5260161 ttttagcaaatgtactaaaactatcg--aagtaataaaatttataagttcgtatccacaaggact 5260099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 12747127 - 12747090
Alignment:
Q  45 aagttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  12747127 aagttcgtatccacaaggactgtttcaatttctactcg 12747090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 28894281 - 28894318
Alignment:
Q  45 aagttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  28894281 aagttcgtatccacatggactgtttcaatttctactcg 28894318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 41778746 - 41778988
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcgnnnnnnntattaaaataa 100  Q
    ||||||||| ||||||||||||||||  |||||||||||||||||||||||||| |||| ||||||||||||||||||||||         |||||||||    
T  41778746 ttttagcaactgtactaaaaatatatcgaagtaataaaatttataagttcgtat-tacaaggactgtttcaatttctactcggcaaaaacgttaaaataa 41778844  T
Q  101 aggatgtatttaattcaagggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagagag 200  Q
    | |||||||| |||||||||||||||||| || |||| ||||| |||||||||||||||||||||||||||||||||||| | ||||||| |||| ||||    
T  41778845 aagatgtattaaattcaagggtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaacaataaaagatt-gatttagaagattaaagag 41778943  T
Q  201 aagtgtggttaagaccttcgaatcatccgaagctctcctatgcta 245  Q
    |||| |||||||||||||| |||| ||||||| ||||||||||||    
T  41778944 aagtatggttaagaccttcaaatcttccgaagttctcctatgcta 41778988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 13097267 - 13097022
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcgnnnnnnntattaaaataa 100  Q
    ||||||||||||||||||||||||||  ||||||||||||||||| ||||||||  ||||||||| ||||||||||||||||         |||||||||    
T  13097267 ttttagcaagtgtactaaaaatatatcgaagtaataaaatttata-gttcgtattcacagggactatttcaatttctactcggcaaaaacgttaaaataa 13097169  T
Q  101 aggatgtatttaattcaagggtgccctagacaattgagttgatgtttgtaacataaacg----aattaaaaa-caataaaagattggttttagaaaatta 195  Q
    |||||||||| ||||||| |||| ||||   | |||| ||| | | ||||||||||| |    ||| ||||| |||||||||||| ||||||||||||||    
T  13097168 aggatgtattaaattcaatggtggcctatggagttgaattggtttgtgtaacataaaagtgataataaaaaaacaataaaagattagttttagaaaatta 13097069  T
Q  196 gagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    ||||||||| ||||||||||||||||||| ||||||| | |||||||    
T  13097068 gagagaagtatggttaagaccttcgaatcctccgaagttatcctatg 13097022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 44008531 - 44008304
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcgnnnnnnntattaaaataa 100  Q
    ||||| ||||||||||||||||||||  |||||||||||||||||||||||||| |||| |||||||||||||||||||| |         |||||||||    
T  44008531 ttttaacaagtgtactaaaaatatatcaaagtaataaaatttataagttcgtatttacatggactgtttcaatttctacttggcaaaaacgttaaaataa 44008432  T
Q  101 aggatgtatttaattcaagggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagagag 200  Q
    |  ||||||| ||||||| ||||||||||||| |||| ||||| | ||||||| ||| | ||||||| ||       |||||||||||||||||||| ||    
T  44008431 attatgtattaaattcaatggtgccctagacagttgatttgatttatgtaacaaaaaaggattaaaagca-------attggttttagaaaattagaaag 44008339  T
Q  201 aagtgtggttaagaccttcgaatcatccgaagctc 235  Q
    || | |||||| |||||||||||| ||||||||||    
T  44008338 aattatggttatgaccttcgaatcctccgaagctc 44008304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 99 - 232
Target Start/End: Original strand, 12575400 - 12575533
Alignment:
Q  99 aaaggatgtatttaattcaagggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagag 198  Q
    |||||||||||| ||||||| |||||||||| || |||||||||| |||||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  12575400 aaaggatgtattaaattcaatggtgccctaggcagttgagttgatttttgtaacataaattgattaaaaacaataaaagattggttttagaaaattagag 12575499  T
Q  199 agaagtgtggttaagaccttcgaatcatccgaag 232  Q
    |||||| ||||||||||| | ||||| |||||||    
T  12575500 agaagtatggttaagaccattgaatcctccgaag 12575533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 12820648 - 12820730
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttat-aagttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||||| ||||||||||||  |||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||    
T  12820648 ttttagcaagtgtgctaaaaatatatcgaagtaataaaatttataaagttcgtatccacatggactgtttcaatttctactcg 12820730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 242
Target Start/End: Complemental strand, 14418585 - 14418467
Alignment:
Q  122 tgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggtttta-gaaaattagagagaagtgtggttaagaccttcg 220  Q
    |||||||| || ||||||||  |||| |||||||||| |||||||||||||||||| ||||||||| ||| ||||||||||||| |||||||||| ||||    
T  14418585 tgccctaggcagttgagttg--gtttttaacataaacaaattaaaaacaataaaag-ttggttttaagaatattagagagaagtatggttaagacattcg 14418489  T
Q  221 aatcatccgaagctctcctatg 242  Q
    |||| ||||||  |||||||||    
T  14418488 aatcctccgaatttctcctatg 14418467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 587672 - 587591
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||| |||||||| ||||||||||   |||||||||||||||||||||||||||  || ||||||||||||||||||||||    
T  587672 ttttaacaagtgtattaaaaatataacgaagtaataaaatttataagttcgtatccgcatggactgtttcaatttctactcg 587591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 626250 - 626331
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||| |||||||| ||||||||||   |||||||||||||||||||||||||||  || ||||||||||||||||||||||    
T  626250 ttttaacaagtgtattaaaaatataacgaagtaataaaatttataagttcgtatccgcatggactgtttcaatttctactcg 626331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 199
Target Start/End: Original strand, 41836317 - 41836394
Alignment:
Q  121 gtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagaga 199  Q
    ||||||||| || |||||||||  ||||||| ||||||||| ||||||||||||||| |||||||||||||||| ||||    
T  41836317 gtgccctaggcagttgagttgacttttgtaatataaacgaaataaaaacaataaaag-ttggttttagaaaatttgaga 41836394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 27805367 - 27805449
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||||||||||||||  ||  || |||||||||||||||| ||||| |  ||||||| ||||||||||||||||||    
T  27805367 ttttagcaagtgtactaaaaatgcatcaaaataataaaatttataagattcgtcttcacagggattgtttcaatttctactcg 27805449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 2847590 - 2847669
Alignment:
Q  3 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||||||||   |||||  ||||||||| ||||||||| |||||||| |||||||||||||||| |||||||||    
T  2847590 ttagcaagtgtactaact-tatatcgaagtaataacatttataagattcgtatccacagggactgtttcaacttctactcg 2847669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 5952471 - 5952392
Alignment:
Q  3 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||||||||   |||||  ||||||||||||||||||| |||||||| ||| |||||||||||| |||||||||    
T  5952471 ttagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtatccacaaggactgtttcaacttctactcg 5952392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 45155040 - 45155101
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggac 64  Q
    |||||||||||||||||||| |||    ||||||||||||||||||||||||||| ||||||||    
T  45155040 ttttagcaagtgtactaaaactatcg--aagtaataaaatttataagttcgtatccacagggac 45155101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 33383705 - 33383626
Alignment:
Q  3 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||||||||   |||||  ||||||||| ||||||||| |||||||| ||| |||||||||||| |||||||||    
T  33383705 ttagcaagtgtactaact-tatatggaagtaataatatttataagattcgtatccacaaggactgtttcaacttctactcg 33383626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 36710408 - 36710472
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgt 67  Q
    |||||||||||||||||| | |||    |||||||||| |||||||||||||||| |||||||||||    
T  36710408 ttttagcaagtgtactaagactatca--aagtaataaagtttataagttcgtatccacagggactgt 36710472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 41836415 - 41836466
Alignment:
Q  191 aattagagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    |||| ||||||||  ||||||||||||||||||| ||||||| |||||||||    
T  41836415 aatttgagagaagcatggttaagaccttcgaatcctccgaagttctcctatg 41836466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 37681291 - 37681350
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacaggg 62  Q
    |||||||||||||||||| |||||    ||||||||||||||||||||| ||||| ||||||    
T  37681291 ttttagcaagtgtactaataatatcg--aagtaataaaatttataagtttgtatccacaggg 37681350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 5828345 - 5828308
Alignment:
Q  45 aagttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  5828345 aagttcgtatccacatggactgtttcaatttctactcg 5828308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 12104222 - 12104298
Alignment:
Q  2 tttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttcta 78  Q
    |||||||||||| |||||  |||||  ||||||||||||||||||| || ||||| | |||||||||||||| |||||    
T  12104222 tttagcaagtgtgctaaac-tatatcgaagtaataaaatttataagatttgtatccatagggactgtttcaacttcta 12104298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 3 - 199
Target Start/End: Complemental strand, 50097020 - 50096825
Alignment:
Q  3 ttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcgnnnnnnntattaaaataaag 102  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||         |||||||||||    
T  50097020 ttagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagggactgtttcaatttctactcggaaaaaa-gttaaaataaag 50096922  T
Q  103 gatgtatttaattcaagggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagaga 199  Q
    |||||||| |||||||| ||||||||  || |||||||||| ||||||||||||||| | |||||||| |||||| | | |||||||||||||||||    
T  50096921 gatgtattaaattcaagagtgccctaagcagttgagttgatttttgtaacataaacgtaataaaaacagtaaaagttggtttttagaaaattagaga 50096825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 9155167 - 9155086
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||||||||||||||| ||  || |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9155167 ttttagcaagtgtactaaaaataaatcgaaataataaaatttataagttcgtatccacagggactgtttcaatttctactcg 9155086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 120 - 242
Target Start/End: Original strand, 22626434 - 22626554
Alignment:
Q  120 ggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagagagaagtgtggttaagaccttc 219  Q
    |||||||||| || |||||||||| || |||||||||||  |||||||||||||||  ||||| ||||||||||| ||||||||| |||||||| |||||    
T  22626434 ggtgccctaggcagttgagttgat-ttagtaacataaactgattaaaaacaataaagaattggatttagaaaatt-gagagaagtatggttaagtccttc 22626531  T
Q  220 gaatcatccgaagctctcctatg 242  Q
    ||||| ||| |||||||||||||    
T  22626532 gaatcctccaaagctctcctatg 22626554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 121 - 242
Target Start/End: Original strand, 39563633 - 39563754
Alignment:
Q  121 gtgccctagacaattgagttgatgtttgtaacataaacgaa-ttaaaaacaataaaagattggttttagaaaattagagagaagtgtggttaagaccttc 219  Q
    ||||||||| || |||||||||| |||||||||||||| || ||||||| | ||||||||||||||||||||||  ||||||||  |||||||| |||||    
T  39563633 gtgccctaggcagttgagttgat-tttgtaacataaacaaaattaaaaatagtaaaagattggttttagaaaatctgagagaagaatggttaagtccttc 39563731  T
Q  220 gaatcatccgaagctctcctatg 242  Q
    ||||| ||||| |||||||||||    
T  39563732 gaatcctccgacgctctcctatg 39563754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 9158349 - 9158268
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||||||||||||||| ||  ||||||||||||||||||||  |||| |||||||||||||||||||||||||||    
T  9158349 ttttagcaagtgtactaaaaataaatcgaagtaataaaatttataagtatgtatttacagggactgtttcaatttctactcg 9158268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 120 - 242
Target Start/End: Original strand, 11138692 - 11138812
Alignment:
Q  120 ggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagagagaagtgtggttaagaccttc 219  Q
    |||||||||| || |||||||||| || |||||||||||  ||||||||||||| |  ||||| || |||||||| ||||||||| |||||||| |||||    
T  11138692 ggtgccctaggcagttgagttgat-ttagtaacataaactgattaaaaacaatatagaattggattcagaaaatt-gagagaagtatggttaagtccttc 11138789  T
Q  220 gaatcatccgaagctctcctatg 242  Q
    ||||| ||| |||||||||||||    
T  11138790 gaatcctccaaagctctcctatg 11138812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 13979565 - 13979488
Alignment:
Q  165 aaaacaataaaagattggtttta-gaaaattagagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    ||||||||||||| ||||||||| ||| ||||||||||||| ||||||||||||| ||||| |||||||||||||||||    
T  13979565 aaaacaataaaag-ttggttttaagaatattagagagaagtatggttaagacctttgaatcctccgaagctctcctatg 13979488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 46731561 - 46731496
Alignment:
Q  177 gattggttttagaaaattagagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    ||||||||||||||||||||||||| ||  |||||||||||||||||| ||||||| |||| ||||    
T  46731561 gattggttttagaaaattagagagatgtaaggttaagaccttcgaatcctccgaagttctcatatg 46731496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 10557812 - 10557891
Alignment:
Q  3 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||||||||   |||||  ||||||||||||||||||| ||||| || |||||||||||||||| |||||||||    
T  10557812 ttagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtttccacagggactgtttcaacttctactcg 10557891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 18552028 - 18551950
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctac 79  Q
    |||||||||||||| ||||||   ||| ||||||||||||| | ||||||||||| ||  ||||||||| |||||||||    
T  18552028 ttttagcaagtgtaataaaaaagaattgaagtaataaaattcacaagttcgtatcaactaggactgttttaatttctac 18551950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 19194060 - 19194006
Alignment:
Q  29 aagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||||| ||||||||    
T  19194060 aagtaataaaatttataagattcgtatccacaaggactgtttcaatatctactcg 19194006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 26273373 - 26273320
Alignment:
Q  29 aagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcg 82  Q
    |||||||||||||||||||||||| |||||| ||| ||||| || |||||||||    
T  26273373 aagtaataaaatttataagttcgtctctacaaggattgtttaaacttctactcg 26273320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 10902384 - 10902345
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaat 40  Q
    |||||||||||||||||||||| ||| |||||||||||||    
T  10902384 ttttagcaagtgtactaaaaatgtatctaagtaataaaat 10902345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 25261030 - 25260985
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataa 46  Q
    ||||||||||||||||||||||  ||  ||||||||||||||||||    
T  25261030 ttttagcaagtgtactaaaaatgcatcaaagtaataaaatttataa 25260985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 194
Target Start/End: Original strand, 20536436 - 20536530
Alignment:
Q  99 aaaggatgtatttaattcaagggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggttt-tagaaaatt 194  Q
    |||||||||| | |||||||||||||||||| || ||| |||||  | ||||||| ||||| | | ||||||||||||| ||||||| |||||||||    
T  20536436 aaaggatgtagtaaattcaagggtgccctaggcagttgggttgacttgtgtaacacaaacgtaat-aaaacaataaaag-ttggtttatagaaaatt 20536530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 17944980 - 17944838
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcgnnnnnnntattaaaataa 100  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||| |||||||||||||||||||||        ||||||||||    
T  17944980 ttttagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacagagactgtttcaatttctactcggcaaaagcattaaaataa 17944881  T
Q  101 aggatgtatttaattcaagggtgccctagacaattgagttgat 143  Q
    ||||| |||| ||||||| |||||||||| || ||||||||||    
T  17944880 aggatatattaaattcaatggtgccctaggcagttgagttgat 17944838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 107 - 241
Target Start/End: Original strand, 11988974 - 11989108
Alignment:
Q  107 tatttaattcaagggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagagagaagtgt 206  Q
    |||| ||||||| ||| |||||| || |||||||||| ||||||||||||||  ||||||||| ||||||||||| ||||||||||||||||||||||      
T  11988974 tattaaattcaatggtcccctaggcagttgagttgatttttgtaacataaacagattaaaaacgataaaagattgattttagaaaattagagagaagtaa 11989073  T
Q  207 ggttaagaccttcgaatcatccgaagctctcctat 241  Q
    |||||||||||||||||| ||| ||| ||||||||    
T  11989074 ggttaagaccttcgaatcctccaaagttctcctat 11989108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 120 - 242
Target Start/End: Complemental strand, 33575212 - 33575091
Alignment:
Q  120 ggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggtttt-agaaaattagagagaagtgtggttaagacctt 218  Q
    |||||||||| || |||||||||| || |||||||||||  |||||||||||||||  ||||||||| |||||||| ||||||||| |||||||| ||||    
T  33575212 ggtgccctaggcagttgagttgat-ttagtaacataaactgattaaaaacaataaagaattggtttttagaaaatt-gagagaagtatggttaagtcctt 33575115  T
Q  219 cgaatcatccgaagctctcctatg 242  Q
    |||||| |||||||||||||||||    
T  33575114 cgaatcctccgaagctctcctatg 33575091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 121 - 242
Target Start/End: Original strand, 26712465 - 26712586
Alignment:
Q  121 gtgccctagacaattgagttgatgtttgtaacataaacgaa-ttaaaaacaataaaagattggttttagaaaattagagagaagtgtggttaagaccttc 219  Q
    |||||||||||| |||||||||| |||||||||||||| || ||||||| | ||||||||||||||||||||||  ||||||||  |||||||| | |||    
T  26712465 gtgccctagacagttgagttgat-tttgtaacataaacaaaattaaaaatagtaaaagattggttttagaaaatctgagagaagaatggttaagtctttc 26712563  T
Q  220 gaatcatccgaagctctcctatg 242  Q
    ||||| ||||| |||||||||||    
T  26712564 gaatcctccgacgctctcctatg 26712586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 121 - 242
Target Start/End: Original strand, 26982203 - 26982324
Alignment:
Q  121 gtgccctagacaattgagttgatgtttgtaacataaacgaa-ttaaaaacaataaaagattggttttagaaaattagagagaagtgtggttaagaccttc 219  Q
    |||||||||||| |||||||||| |||||||||||||| || ||||||| | ||||||||||||||||||||||  ||||||||  |||||||| | |||    
T  26982203 gtgccctagacagttgagttgat-tttgtaacataaacaaaattaaaaatagtaaaagattggttttagaaaatctgagagaagaatggttaagtctttc 26982301  T
Q  220 gaatcatccgaagctctcctatg 242  Q
    ||||| ||||| |||||||||||    
T  26982302 gaatcctccgacgctctcctatg 26982324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 120 - 239
Target Start/End: Original strand, 15532322 - 15532441
Alignment:
Q  120 ggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggtttt--agaaaattagagagaagtgtggttaagacct 217  Q
    |||||||||| || |||||||||| || |||||||||||  |||||||||||||||  |||||||||  |||||||| ||||||||| |||||||| |||    
T  15532322 ggtgccctaggcagttgagttgat-ttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagagaagtatggttaagtcct 15532419  T
Q  218 tcgaatcatccgaagctctcct 239  Q
    ||||||| ||  ||||||||||    
T  15532420 tcgaatcctctaaagctctcct 15532441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 120 - 239
Target Start/End: Original strand, 15542504 - 15542623
Alignment:
Q  120 ggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggtttt--agaaaattagagagaagtgtggttaagacct 217  Q
    |||||||||| || |||||||||| || |||||||||||  |||||||||||||||  |||||||||  |||||||| ||||||||| |||||||| |||    
T  15542504 ggtgccctaggcagttgagttgat-ttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagagaagtatggttaagtcct 15542601  T
Q  218 tcgaatcatccgaagctctcct 239  Q
    ||||||| ||  ||||||||||    
T  15542602 tcgaatcctctaaagctctcct 15542623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 13423287 - 13423368
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 82  Q
    |||||| ||||||||||||  |||||| ||||||||||||||||||| ||||||||||||  ||||||||||| |||||||||    
T  13423287 ttttagtaagtgtactaaac-tatattgaagtaataaaatttataagattcgtatctacaaagactgtttcaacttctactcg 13423368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 242
Target Start/End: Original strand, 14616575 - 14616672
Alignment:
Q  145 tttgtaacataaacgaattaaaaacaataaaagattggtttt-agaaaattagagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    ||||||||||||||| |   ||||||||||||| ||| |||| |||| ||||||||||||| ||||||||||||| ||||| ||||||| |||||||||    
T  14616575 tttgtaacataaacgtaaataaaacaataaaag-ttgattttaagaatattagagagaagtatggttaagacctttgaatcctccgaagttctcctatg 14616672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 242
Target Start/End: Complemental strand, 34405968 - 34405850
Alignment:
Q  122 tgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggtttt-agaaaattagagagaagtgtggttaagaccttcg 220  Q
    |||||||| || |||||||| |||  |||||||||||| |   ||||||||||||| |||||||| |||| ||||||||||||| ||||||||||||||     
T  34405968 tgccctaggcagttgagttgttgt--gtaacataaacgtaaataaaacaataaaag-ttggttttcagaatattagagagaagtatggttaagaccttca 34405872  T
Q  221 aatcatccgaagctctcctatg 242  Q
    |||| || |||| |||||||||    
T  34405871 aatcctctgaagttctcctatg 34405850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 35432275 - 35432322
Alignment:
Q  35 taaaatttataagttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  35432275 taaaatttataagttcgtatccacagggactgtttcaatttttactcg 35432322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 22159823 - 22159746
Alignment:
Q  165 aaaacaataaaagattggtttta-gaaaattagagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    |||||||||||| |||||||||| ||| ||||||||||| | ||||||||||||| ||||| ||||||| |||||||||    
T  22159823 aaaacaataaaa-attggttttaagaatattagagagaaatatggttaagacctttgaatcctccgaagttctcctatg 22159746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 43103690 - 43103744
Alignment:
Q  29 aagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||||||||||| |||||||||| |||||||||||||| |||||||||    
T  43103690 aagtaataaaatttataagattcgtatctatagggactgtttcaacttctactcg 43103744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 18239276 - 18239340
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggact 65  Q
    |||||||||||||| |||||||  ||  ||||||||||||||||||||||||||| ||| |||||    
T  18239276 ttttagcaagtgtattaaaaatgaatcgaagtaataaaatttataagttcgtatccacatggact 18239340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 22036203 - 22036124
Alignment:
Q  3 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||||||||   |||||  ||||||||||||||||||| ||||| || |||||||||||||||| |||||||||    
T  22036203 ttagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtttccacagggactgtttcaacttctactcg 22036124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 36700780 - 36700726
Alignment:
Q  29 aagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||||||||||| ||| |||| |||||||||||||||| |||||||||    
T  36700780 aagtaataaaatttataagattcatatccacagggactgtttcaacttctactcg 36700726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 22039429 - 22039350
Alignment:
Q  3 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||||||||   |||||  ||||||||||||||||||| ||||| || | |||||||||||||| |||||||||    
T  22039429 ttagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtttccatagggactgtttcaacttctactcg 22039350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 242
Target Start/End: Original strand, 7650088 - 7650185
Alignment:
Q  145 tttgtaacataaacgaattaaaaacaataaaagattggtttt-agaaaattagagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    ||||||||||||||| |   ||||||||||||| ||| |||| |||| ||||||||||||| |||||||||| || ||||| | ||||| ||| |||||    
T  7650088 tttgtaacataaacgtaaataaaacaataaaag-ttgcttttaagaatattagagagaagtatggttaagacatttgaatcctacgaagttcttctatg 7650185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 36357099 - 36357021
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttcta 78  Q
    ||||| ||||||||||||||||  ||  ||||||||| ||||||||| ||||| || ||| |||| |||||||||||||    
T  36357099 ttttaacaagtgtactaaaaatgcatcgaagtaataatatttataagattcgtctccacatggaccgtttcaatttcta 36357021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 33320725 - 33320762
Alignment:
Q  45 aagttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||| |||||||||| |||||||||||||||    
T  33320725 aagttcgtatccacagggactgcttcaatttctactcg 33320762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 99 - 242
Target Start/End: Original strand, 23673445 - 23673588
Alignment:
Q  99 aaaggatgtatttaattcaagggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagag 198  Q
    |||||||||||| ||||||||| |||||||| || |||  |||   ||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||    
T  23673445 aaaggatgtattaaattcaaggttgccctaggcagttggattggcatttgtaaaataaacggattaaaaacaataaaagtttggttttagaaaattagag 23673544  T
Q  199 agaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    ||| || ||||||||||||||||||| ||||||| |||||||||    
T  23673545 agatgtatggttaagaccttcgaatcctccgaagttctcctatg 23673588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 146 - 242
Target Start/End: Complemental strand, 13710169 - 13710072
Alignment:
Q  146 ttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagagagaagtgtggttaagaccttcgaatcatccg-aagctctcctatg 242  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||| | |||||||||||||    
T  13710169 ttgtaacataaacggattaaaaacaataaaagattggttttagaaaatttgagagaagtatggttaagaccttcaaatcatctgaaagctctcctatg 13710072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 30720134 - 30719992
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcgnnnnnnntattaaaataa 100  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||| ||||| |||||| |||||||||||||||||||         |||||||||    
T  30720134 ttttagcaagtgtactaaaaatatatcgaagtaataaaatttataagtttgtatccacaggggctgtttcaatttctactcggcaaaagcgttaaaataa 30720035  T
Q  101 aggatgtatttaattcaagggtgccctagacaattgagttgat 143  Q
    ||||| |||| ||||||| |||||| ||| || ||||||||||    
T  30720034 aggatatattaaattcaatggtgccttaggcagttgagttgat 30719992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 122 - 242
Target Start/End: Complemental strand, 40018099 - 40017981
Alignment:
Q  122 tgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagagagaagtgtggttaagaccttcga 221  Q
    |||||||| || ||||||||||  |||||||||||||| |||||||||||||| ||| |||||| |||||| | ||||||||| ||||||||||||||||    
T  40018099 tgccctaggcagttgagttgat--ttgtaacataaacggattaaaaacaataagagactggtttaagaaaaattgagagaagtatggttaagaccttcga 40018002  T
Q  222 atcatccgaagctctcctatg 242  Q
    ||| |||||| ||||||||||    
T  40018001 atcctccgaaactctcctatg 40017981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 145 - 242
Target Start/End: Complemental strand, 36327025 - 36326928
Alignment:
Q  145 tttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    ||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||| ||||| ||||||| |||| ||||    
T  36327025 tttgtaaaataaacggattaaaaacaataaaagtttggttttagaaaattagagagatgtatggttaagacctttgaatcctccgaagttctcatatg 36326928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 120 - 242
Target Start/End: Complemental strand, 31626673 - 31626551
Alignment:
Q  120 ggtgccctagacaattgagttgatgtttgtaacataaacg-aattaaaaacaataaaagattggttttagaaaattagagagaagtgtggttaagacctt 218  Q
    |||||||||| || |||||||||| ||||||||||||| | ||||||||| |||||| |||||||||||||||||  ||||||||  |||||||| | ||    
T  31626673 ggtgccctaggcagttgagttgat-tttgtaacataaaaggaattaaaaataataaaggattggttttagaaaatctgagagaagaatggttaagtcatt 31626575  T
Q  219 cgaatcatccgaagctctcctatg 242  Q
    |||||| |||||||||||||||||    
T  31626574 cgaatcctccgaagctctcctatg 31626551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 242
Target Start/End: Complemental strand, 16295019 - 16294900
Alignment:
Q  122 tgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggtttt-agaaaattagagagaagtgtggttaagaccttcg 220  Q
    |||||||| || |||||||||| |||||| |||||||  |||||||||||  ||||||| ||||| |||||||| ||||||||| |||||||| ||||||    
T  16295019 tgccctaggcagttgagttgat-tttgtatcataaaccgattaaaaacaaataaagattagttttcagaaaatt-gagagaagtatggttaagtccttcg 16294922  T
Q  221 aatcatccgaagctctcctatg 242  Q
    |||| ||||||| |||||||||    
T  16294921 aatcctccgaagttctcctatg 16294900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 120 - 239
Target Start/End: Complemental strand, 31528513 - 31528394
Alignment:
Q  120 ggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggtttt--agaaaattagagagaagtgtggttaagacct 217  Q
    |||||||||| || |||||||||| || |||||||||||  |||||||||||||||  |||||||||  |||||||| ||||||||| |||||||| |||    
T  31528513 ggtgccctaggcagttgagttgat-ttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagagaagtatggttaagtcct 31528416  T
Q  218 tcgaatcatccgaagctctcct 239  Q
    ||||||| ||  ||||||||||    
T  31528415 tcgaatcctctaaagctctcct 31528394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 242
Target Start/End: Original strand, 32575851 - 32575930
Alignment:
Q  165 aaaacaataaaagattggtttta-gaaaattagaga--gaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    ||||||||||||| ||||||||| ||| ||||||||  ||||| ||||||||||||||||||| |||||||||||||||||    
T  32575851 aaaacaataaaag-ttggttttaagaatattagagaaagaagtatggttaagaccttcgaatcctccgaagctctcctatg 32575930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 16881638 - 16881559
Alignment:
Q  3 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||||||||   |||||  ||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||    
T  16881638 ttagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtatttacagggactgtttcaacttctactcg 16881559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 17039328 - 17039249
Alignment:
Q  3 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||||||||   |||||  ||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||    
T  17039328 ttagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtatttacagggactgtttcaacttctactcg 17039249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 35077261 - 35077182
Alignment:
Q  3 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||||||||   |||||  ||||||||||||||||||| ||||| || |||||||||||||||| |||||||||    
T  35077261 ttagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtttccacagggactgtttcaacttctactcg 35077182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 35080519 - 35080440
Alignment:
Q  3 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||||||||   |||||  ||||||||||||||||||| ||||| || |||||||||||||||| |||||||||    
T  35080519 ttagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtttccacagggactgtttcaacttctactcg 35080440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 25138701 - 25138740
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaat 40  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  25138701 ttttagcaagtgtactaaaaatatatcgaagtaataaaat 25138740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 43724041 - 43724002
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaat 40  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  43724041 ttttagcaagtgtactaaaaatatatcgaagtaataaaat 43724002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 5666858 - 5666805
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctac 58  Q
    |||||||||||||| |||||||||||  ||||||||||    ||||||||||||||||    
T  5666858 ttttagcaagtgtattaaaaatatatcgaagtaataaa----ataagttcgtatctac 5666805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 7596 - 7454
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcgnnnnnnntattaaaataa 100  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||         |||||||||    
T  7596 ttttagcaagtgtactaaaaatatatcgaagtaataaaatttataagttcgtatccacaaggactgtttcaatttctactcggaaaaagcgttaaaataa 7497  T
Q  101 aggatgtatttaattcaagggtgccctagacaattgagttgat 143  Q
    ||||| |||| ||||||| |||||||||| || ||||||||||    
T  7496 aggatatattaaattcaatggtgccctaggcagttgagttgat 7454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 99 - 242
Target Start/End: Original strand, 26062792 - 26062937
Alignment:
Q  99 aaaggatgtatttaattcaagggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggttttagaaaatt--ag 196  Q
    |||||||||||| ||||||||| ||||||||  | |||  ||| | ||||||| ||||||| ||||||||||||||||| ||||||||||||||||  ||    
T  26062792 aaaggatgtattaaattcaaggttgccctaggtagttggattggtatttgtaaaataaacggattaaaaacaataaaagtttggttttagaaaattagag 26062891  T
Q  197 agagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    ||||| || ||||||||||||| ||||| ||||||| |||||||||    
T  26062892 agagatgtatggttaagacctttgaatcctccgaagttctcctatg 26062937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 24605007 - 24605148
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcgnnnnnnntattaaaataa 100  Q
    ||||||||||||||||||||||||||  |||||||||||| |||||||||||||| ||| |||||||||||||||||||| |         |||||||||    
T  24605007 ttttagcaagtgtactaaaaatatatcgaagtaataaaatctataagttcgtatccacaaggactgtttcaatttctacttggcaaaaacgttaaaataa 24605106  T
Q  101 aggatgtatttaattcaagggtgccctagacaattgagttgat 143  Q
    |||||||||| ||||||| |||| ||||| || ||||||||||    
T  24605107 aggatgtattaaattcaatggtg-cctaggcagttgagttgat 24605148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 7394630 - 7394710
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactc 81  Q
    |||||||||||||||||||| |||||  ||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  7394630 ttttagcaagtgtactaaaagtatatcgaagtaataaaatttataagttcgtatccacatggactgtttcaatttctactc 7394710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 242
Target Start/End: Complemental strand, 2542028 - 2541886
Alignment:
Q  99 aaaggatgtatttaattcaagggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattgg-ttttagaaaattaga 197  Q
    |||||||||||| ||||||| |||||||||| || ||||||| ||  |||||||||||||| |||||||||||||||| || || |||| |||||||| |    
T  2542028 aaaggatgtattaaattcaatggtgccctaggcagttgagtttattcttgtaacataaacggattaaaaacaataaaatataggttttttgaaaattaaa 2541929  T
Q  198 gagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    |||  || ||||||||||||||||||| || |||| |||| ||||    
T  2541928 gag--gtatggttaagaccttcgaatcctctgaagttctcttatg 2541886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 26703244 - 26703323
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctact 80  Q
    ||||||||||| ||||||||||  ||  |||||||||||||||||| |||||||||||||| || |||||||||||||||    
T  26703244 ttttagcaagtatactaaaaatgcatcaaagtaataaaatttataacttcgtatctacaggaaccgtttcaatttctact 26703323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 242
Target Start/End: Original strand, 647350 - 647447
Alignment:
Q  145 tttgtaacataaacgaattaaaaacaataaaagattggtttt-agaaaattagagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    ||||||||||||||| |   ||||||||||||| |||||||| |||| ||||||||||||| ||||||||| ||||||||| || |||| |||||||||    
T  647350 tttgtaacataaacgtaaataaaacaataaaag-ttggttttcagaatattagagagaagtatggttaagatcttcgaatcctctgaagttctcctatg 647447  T

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Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 242
Target Start/End: Original strand, 650622 - 650719
Alignment:
Q  145 tttgtaacataaacgaattaaaaacaataaaagattggtttt-agaaaattagagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    ||||||||||||||| |   ||||||||||||| |||||||| | || ||||||||||||| ||||||||||||||||||| || |||| |||||||||    
T  650622 tttgtaacataaacgtaaataaaacaataaaag-ttggttttcataatattagagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 650719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 199
Target Start/End: Original strand, 11649328 - 11649405
Alignment:
Q  121 gtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagaga 199  Q
    ||||||||| || |||||||||  ||||||| ||||||||| ||||||||||||||| |||||||||||||||| ||||    
T  11649328 gtgccctaggcagttgagttgacttttgtaatataaacgaaataaaaacaataaaag-ttggttttagaaaatttgaga 11649405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 202
Target Start/End: Complemental strand, 26060733 - 26060653
Alignment:
Q  121 gtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggttttagaaaattagagagaa 202  Q
    ||||||||| ||  ||||||||| ||||||| ||||| ||| ||||||||||||||| |||||||||||||||| |||||||    
T  26060733 gtgccctaggcaggtgagttgatttttgtaatataaatgaaataaaaacaataaaag-ttggttttagaaaatttgagagaa 26060653  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 2437031 - 2436966
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactg 66  Q
    |||||| || ||||||||||||||||  |||||||||||||||||||||| |||| ||| ||||||    
T  2437031 ttttagtaaatgtactaaaaatatatcgaagtaataaaatttataagttcatatccacaaggactg 2436966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 54900122 - 54900044
Alignment:
Q  3 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactc 81  Q
    ||||||||||||||||   |||||  ||||||||||||||||||| |||||||| ||| |||||||||||| ||||||||    
T  54900122 ttagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtatccacatggactgtttcaacttctactc 54900044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 19859274 - 19859337
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactg 66  Q
    ||||| |||||||||||||| ||||   ||||||||||||||||||||||||||| | ||||||||    
T  19859274 ttttaacaagtgtactaaaactatag--aagtaataaaatttataagttcgtatccaaagggactg 19859337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 53094862 - 53094796
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgt 67  Q
    |||||||||||||| || ||||  ||  |||||||||| |||||||||||||||| |||||||||||    
T  53094862 ttttagcaagtgtattataaatgaatcgaagtaataaactttataagttcgtatccacagggactgt 53094796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 11649426 - 11649477
Alignment:
Q  191 aattagagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    |||| ||||||||  ||||||||||||||||||| ||||||| |||||||||    
T  11649426 aatttgagagaagcatggttaagaccttcgaatcctccgaagttctcctatg 11649477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 132
Target Start/End: Complemental strand, 37176955 - 37176867
Alignment:
Q  45 aagttcgtatctacagggactgtttcaatttctactcgnnnnnnntattaaaataaaggatgtatttaattcaaggg-tgccctagaca 132  Q
    ||||||||||| ||| ||||||||||||||||||||||         ||||||||||||||||||| |||| | ||| |||||||||||    
T  37176955 aagttcgtatccacaaggactgtttcaatttctactcggcaaaagctttaaaataaaggatgtattaaatttatgggttgccctagaca 37176867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 49271032 - 49270993
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaat 40  Q
    |||||| |||||||||||||||||||| ||||||||||||    
T  49271032 ttttagtaagtgtactaaaaatatattgaagtaataaaat 49270993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 26060635 - 26060589
Alignment:
Q  196 gagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    ||||||||  ||||||||||||||||||| ||||||| |||||||||    
T  26060635 gagagaagcatggttaagaccttcgaatcctccgaagttctcctatg 26060589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 22884195 - 22884239
Alignment:
Q  29 aagtaataaaatttataag-ttcgtatctacagggactgtttcaa 72  Q
    ||||||||||||||||||| |||||||| |||| |||||||||||    
T  22884195 aagtaataaaatttataagattcgtatccacagtgactgtttcaa 22884239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 22935859 - 22935903
Alignment:
Q  29 aagtaataaaatttataag-ttcgtatctacagggactgtttcaa 72  Q
    ||||||||||||||||||| |||||||| |||| |||||||||||    
T  22935859 aagtaataaaatttataagattcgtatccacagtgactgtttcaa 22935903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 26060852 - 26060801
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatc 55  Q
    |||||||||||||||||||||| |||  |||||||||||   |||||||||||||    
T  26060852 ttttagcaagtgtactaaaaatgtatcgaagtaataaaa---ataagttcgtatc 26060801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 40795361 - 40795321
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatt 41  Q
    |||||||||||||||||||||| |||  |||||||||||||    
T  40795361 ttttagcaagtgtactaaaaatgtatcgaagtaataaaatt 40795321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 124 - 242
Target Start/End: Complemental strand, 9982 - 9865
Alignment:
Q  124 ccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggtttt-agaaaattagagagaagtgtggttaagaccttcgaa 222  Q
    |||||| || |||||||||| || |||||||||||  |||||||||||||||  ||||||||| |||||||| ||||||||| |||||||| ||||||||    
T  9982 ccctaggcagttgagttgat-ttagtaacataaactgattaaaaacaataaataattggtttttagaaaatt-gagagaagtatggttaagtccttcgaa 9885  T
Q  223 tcatccgaagctctcctatg 242  Q
    || |||||||||||||||||    
T  9884 tcctccgaagctctcctatg 9865  T

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Target: scaffold0363 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 242
Target Start/End: Original strand, 133 - 251
Alignment:
Q  122 tgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggtttt-agaaaattagagagaagtgtggttaagaccttcg 220  Q
    |||||||| || ||||||||  |||| |||||||||| |||||||||||||||||| |||||||| |||| ||||||||||||| |||||||||| ||||    
T  133 tgccctaggcagttgagttg--gtttttaacataaacaaattaaaaacaataaaag-ttggttttaagaatattagagagaagtatggttaagacattcg 229  T
Q  221 aatcatccgaagctctcctatg 242  Q
    |||| ||||||  |||||||||    
T  230 aatcctccgaatttctcctatg 251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 242
Target Start/End: Original strand, 24307 - 24426
Alignment:
Q  120 ggtgccctagacaattgagttgatgtttgtaacataaacgaattaaaaacaataaaagattgg-ttttagaaaattagagagaagtgtggttaagacctt 218  Q
    |||||||||| || |||||||||| || ||||  |||||  |||||||||||||||  ||||| |||||||||||| ||||||||  |||||||| ||||    
T  24307 ggtgccctaggcagttgagttgat-ttagtaa--taaactgattaaaaacaataaagaattggtttttagaaaatt-gagagaagcatggttaagtcctt 24402  T
Q  219 cgaatcatccgaagctctcctatg 242  Q
    |||||| |||||||||||||||||    
T  24403 cgaatcctccgaagctctcctatg 24426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0567 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 5995 - 6054
Alignment:
Q  183 ttttagaaaattagagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||| | |||||||||    
T  5995 ttttagaaaattagagagaagtatggttaagaccttcgaatcctccgaggttctcctatg 6054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0884 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0884
Description:

Target: scaffold0884; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 4299 - 4378
Alignment:
Q  3 ttagcaagtgtactaaaaatatatttaagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||||||||   |||||  ||||||||||||||||||| |||||||  |||||||||||||||| |||||||||    
T  4299 ttagcaagtgtactaact-tatatcgaagtaataaaatttataagattcgtattcacagggactgtttcaacttctactcg 4378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0996 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 1691 - 1755
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgt 67  Q
    |||||||||||||||||||| |||    ||||||||||||||||||||||||||| ||| |||||||    
T  1691 ttttagcaagtgtactaaaactatcg--aagtaataaaatttataagttcgtatccacaaggactgt 1755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 157417 - 157363
Alignment:
Q  29 aagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||||||||||| |||| |||||| ||||||||||||| |||||||||    
T  157417 aagtaataaaatttataagattcgaatctacggggactgtttcaacttctactcg 157363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2047 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold2047
Description:

Target: scaffold2047; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 570 - 623
Alignment:
Q  29 aagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactc 81  Q
    ||||||||||||||||||| |||||||| ||||||| |||||||| ||||||||    
T  570 aagtaataaaatttataagattcgtatccacagggattgtttcaacttctactc 623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1657 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1657
Description:

Target: scaffold1657; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 234 - 315
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgtttcaatttctactcg 82  Q
    |||||||||||||| |||||||  ||  |||||||||||||||||||||||| || |||  || ||||||||| || |||||    
T  234 ttttagcaagtgtattaaaaatgcatcgaagtaataaaatttataagttcgtctccacaaagattgtttcaatctcaactcg 315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 2794 - 2847
Alignment:
Q  189 aaaattagagagaagtgtggttaagaccttcgaatcatccgaagctctcctatg 242  Q
    |||||| ||||||||| | ||||||||||| ||||| |||||||||||||||||    
T  2794 aaaatttgagagaagtatcgttaagacctttgaatcctccgaagctctcctatg 2847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 13910 - 13873
Alignment:
Q  45 aagttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  13910 aagttcgtatccacagggactgtttcaatttctactcg 13873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 11567 - 11530
Alignment:
Q  45 aagttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  11567 aagttcgtatccacagggactgtttcaatttatactcg 11530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2073 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold2073
Description:

Target: scaffold2073; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 636 - 700
Alignment:
Q  1 ttttagcaagtgtactaaaaatatatttaagtaataaaatttataagttcgtatctacagggactgt 67  Q
    |||||||||||||||||||| |||    |||| |||||||||| ||||||||||| |||||||||||    
T  636 ttttagcaagtgtactaaaactatcg--aagtgataaaatttacaagttcgtatccacagggactgt 700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 136
Target Start/End: Original strand, 90344 - 90436
Alignment:
Q  45 aagttcgtatctacagggactgtttcaatttctactcgnnnnnnntattaaaataaaggatgtatttaattcaaggg-tgccctagacaattg 136  Q
    ||||||||||| ||| ||||||||||||||||||||||         ||||||||||||||||||| |||| | ||| |||||||| ||||||    
T  90344 aagttcgtatccacatggactgtttcaatttctactcggcaaaagcgttaaaataaaggatgtattaaatttatgggttgccctaggcaattg 90436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 36159 - 36105
Alignment:
Q  29 aagtaataaaatttataag-ttcgtatctacagggactgtttcaatttctactcg 82  Q
    ||||||||||||||||||| || ||||| ||||||| |||||||| |||||||||    
T  36159 aagtaataaaatttataagatttgtatccacagggagtgtttcaacttctactcg 36105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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