View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2273_low_15 (Length: 247)
Name: NF2273_low_15
Description: NF2273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2273_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 10342081 - 10341845
Alignment:
| Q |
1 |
taaataatggaatgttacaaaagcatatgccctatattgtaattaataaatttactaattatcattgttcagtgatatgctgcaaagtaagaaaagcaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10342081 |
taaataatggaatgttacaaaagcatatgccctatattgtaattaataaatttactaattatcattgttcagtgatatgctgcaaagtaagaaaagcaca |
10341982 |
T |
|
| Q |
101 |
tagtcaaataacaagattgaatcttagaaatacttcgacataaggtacagtggtggagatgggaaaattaaatttggtttaatattcaaatttctaacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10341981 |
tagtcaaataacaagattgaatcttagaaatacttcgacacaagatacagtggtggagatgggaaaattaaatttggtttaatattcaaatttctaacta |
10341882 |
T |
|
| Q |
201 |
aacaatggaaatgagtttgatgtagcttagaaatatt |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10341881 |
aacaatggaaatgagtttgatgtagcttagaaatatt |
10341845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University