View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2273_low_16 (Length: 241)
Name: NF2273_low_16
Description: NF2273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2273_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 34742528 - 34742762
Alignment:
| Q |
1 |
tctagacaacttcaggattgtaagggatgaaaaacaaactaagctaggaagtgagacggcacatc-----------aattcctctaaagacttgcattta |
89 |
Q |
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| T |
34742528 |
tctagacaacttcaggattgtaagggatgaaaaacaaactaagctaggaagtgagacggcacatccattcagcatcaattcctctaaagacttgcattta |
34742627 |
T |
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| Q |
90 |
aaaagggcataagaggaaactgtgagttctttctgcaaatcgacacaaagctttttgattctataacttaaaacaacagatatcagattgttaatataag |
189 |
Q |
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| T |
34742628 |
aaaagggcataagaggaaactgtgagttctttctgcaaatcgacataaagctttttgattctataacttaatacaacagatatcagattgttaatataag |
34742727 |
T |
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| Q |
190 |
aagaatcatatgttcgtgccaatgcaagagaaaaa |
224 |
Q |
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| T |
34742728 |
aagaatcatatgttcgtgccaatgcaagagaaaaa |
34742762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 34751705 - 34751774
Alignment:
| Q |
1 |
tctagacaacttcaggattgtaagggatgaaaaacaaactaagctaggaagtgagacggcacatcaattc |
70 |
Q |
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| T |
34751705 |
tctagacaacttcaggattgtaagggatgaaagacaaacaaagctaggaagtgtgaaggcacatccattc |
34751774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 34759532 - 34759601
Alignment:
| Q |
1 |
tctagacaacttcaggattgtaagggatgaaaaacaaactaagctaggaagtgagacggcacatcaattc |
70 |
Q |
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| T |
34759532 |
tctagacaacttcaggattgtaagggatgaaagacaaacaatgctaggaagtctgaaggcacatccattc |
34759601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 34747170 - 34747248
Alignment:
| Q |
65 |
caattcctctaaagacttgcatttaaaaagggcataagaggaaactgtgagttctttctgcaaatcgacacaaagcttt |
143 |
Q |
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||||||||||||||||| |||||| ||||||| || ||| ||||||| ||| || || ||||||| ||| | ||||||| |
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| T |
34747170 |
caattcctctaaagactggcattttaaaaggggatcagacgaaactgcgaggtcattttgcaaatagacgcgaagcttt |
34747248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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