View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2273_low_18 (Length: 237)

Name: NF2273_low_18
Description: NF2273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2273_low_18
NF2273_low_18
[»] chr4 (9 HSPs)
chr4 (1-221)||(10483957-10484191)
chr4 (16-221)||(10470034-10470250)
chr4 (106-220)||(40789349-40789463)
chr4 (15-167)||(5203944-5204110)
chr4 (100-197)||(51302943-51303041)
chr4 (23-76)||(40789097-40789150)
chr4 (26-90)||(9536637-9536701)
chr4 (123-195)||(38224664-38224736)
chr4 (140-216)||(46762864-46762940)
[»] chr2 (3 HSPs)
chr2 (16-218)||(35060861-35061077)
chr2 (127-216)||(3276057-3276146)
chr2 (19-90)||(43111769-43111840)
[»] chr7 (1 HSPs)
chr7 (124-208)||(29339769-29339853)
[»] chr8 (1 HSPs)
chr8 (124-197)||(18888905-18888978)


Alignment Details
Target: chr4 (Bit Score: 139; Significance: 7e-73; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 10484191 - 10483957
Alignment:
Q  1 gagctttatgctgtgaacttgcttgctattctgattctcttgcttgtatcaaccttattaatggtcccattgagagataccatatctatgt--ttctcat 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||    
T  10484191 gagctttatgctgtgaacttgcttgctattctgattctcttgcttgtatcaaccttattaatggtcccattgagagataccatatctctgttgttctcat 10484092  T
Q  99 cca------------aatgcttcaacaaaccaatgcaacggtttctcacactcttagagaggggaaccattgtgcagactacatgaaaaagcttggagct 186  Q
    |||            |||||||||||||| |||||||||  ||||||||||||||||||| ||||||||||| ||||||||||||  ||||| || ||||    
T  10484091 ccaagagataaaaccaatgcttcaacaaatcaatgcaacaatttctcacactcttagagaagggaaccattgggcagactacatggcaaagcctgaagct 10483992  T
Q  187 tattctgatgtggaacttcttcgtcatgatgtcct 221  Q
    | |||||||||||||||||||||||||||||||||    
T  10483991 tcttctgatgtggaacttcttcgtcatgatgtcct 10483957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 10470250 - 10470034
Alignment:
Q  16 aacttgcttgctattctgattctcttgcttgtatcaaccttattaatggtcccattgagagataccatatctatgt--ttctcatccaa----------- 102  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||| | ||||||||||||||||||  |||||||||||               
T  10470250 aacttgcttgctattctgattctcttgcttgcgtcaaccttattaatggtcccatcgtgagataccatatctatgtggttctcatccaagagataaaaca 10470151  T
Q  103 -atgcttcaacaaaccaatgcaacggtttctcacactcttagagaggggaaccattgtgcagactacatgaaaaagcttggagcttattctgatgtggaa 201  Q
     |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   |||||||||||||    
T  10470150 aatgcttcaacaaaccaatccaacggtttctcacactcttagagaggggaaccattgtgcagactacatgaaaaagctcggagc---ttctgatgtggaa 10470054  T
Q  202 cttcttcgtcatgatgtcct 221  Q
    ||||||||||||||||||||    
T  10470053 cttcttcgtcatgatgtcct 10470034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 106 - 220
Target Start/End: Original strand, 40789349 - 40789463
Alignment:
Q  106 cttcaacaaaccaatgcaacggtttctcacactcttagagaggggaaccattgtgcagactacatgaaaaagcttggagcttattctgatgtggaacttc 205  Q
    |||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||| ||||| |||| ||||||||||||    
T  40789349 cttcaacaaaccaatctaacggtttctcgcactcttagagaggggaaccattgtgcagactacatggcaaagcttgaagcttcttctaatgtggaacttc 40789448  T
Q  206 ttcgtcatgatgtcc 220  Q
    ||| |||||||||||    
T  40789449 ttcttcatgatgtcc 40789463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 167
Target Start/End: Complemental strand, 5204110 - 5203944
Alignment:
Q  15 gaacttgcttgctattctgattctcttgcttgtatcaaccttattaatggtcccattgagagataccatatctatgtt--tctcatccaa---------- 102  Q
    |||||| ||||||||||||||||||||||||| |||||||||||  |||| ||||||||||| | ||||||||||| |  | |||| |||              
T  5204110 gaactttcttgctattctgattctcttgcttgcatcaaccttatatatggccccattgagaggttccatatctatgctgttatcatacaagacataaaac 5204011  T
Q  103 --atgcttcaacaaaccaatgcaacggtttctcacactcttagagaggggaaccattgtgcagacta 167  Q
      ||||||||||||| ||||| |||||||||||||||||||||||||||||| || |||||| ||||    
T  5204010 aaatgcttcaacaaatcaatgtaacggtttctcacactcttagagaggggaatcaatgtgcaaacta 5203944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 51303041 - 51302943
Alignment:
Q  100 caaatgcttcaacaaaccaatgcaacggtttctcacactctt-agagaggggaaccattgtgcagactacatgaaaaagcttggagcttattctgatgt 197  Q
    ||||||||||| |||  ||||| ||||||||||||||||||| ||||||| ||| || ||||||||||| |||| |||||||| ||||| || ||||||    
T  51303041 caaatgcttcatcaactcaatgtaacggtttctcacactcttaagagaggagaatcaatgtgcagactatatgacaaagcttgaagcttcttatgatgt 51302943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 40789097 - 40789150
Alignment:
Q  23 ttgctattctgattctcttgcttgtatcaaccttattaatggtcccattgagag 76  Q
    |||||||||||||||||||||||| |||||| |||||||||| |||||||||||    
T  40789097 ttgctattctgattctcttgcttgcatcaactttattaatggccccattgagag 40789150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 9536637 - 9536701
Alignment:
Q  26 ctattctgattctcttgcttgtatcaaccttattaatggtcccattgagagataccatatctatg 90  Q
    ||||||||||||||||| ||| ||  | ||||||||||| |||||||| || |||||||| ||||    
T  9536637 ctattctgattctcttgtttgcatttatcttattaatggccccattgaaaggtaccatatatatg 9536701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 195
Target Start/End: Original strand, 38224664 - 38224736
Alignment:
Q  123 aacggtttctcacactcttagagaggggaaccattgtgcagactacatgaaaaagcttggagcttattctgat 195  Q
    |||||||||||||||||||||||||   || || ||||||||||  |||  ||||||| |||||| |||||||    
T  38224664 aacggtttctcacactcttagagagaaaaatcagtgtgcagacttaatggcaaagcttagagcttcttctgat 38224736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 46762864 - 46762940
Alignment:
Q  140 ttagagaggggaaccattgtgcagactacatgaaaaagcttggagcttattctgatgtggaacttcttcgtcatgat 216  Q
    |||| ||||| || || |||||||||||||||| ||||||| |||||  ||||||| | || ||||||| |||||||    
T  46762864 ttagtgagggaaatcaatgtgcagactacatgataaagcttagagctgcttctgatattgagcttcttcttcatgat 46762940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 35061077 - 35060861
Alignment:
Q  16 aacttgcttgctattctgattctcttgcttgtatcaaccttattaatggtcccattgagagataccatatctatgtt--tctcatccaa----------- 102  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||  ||  ||||||||||               
T  35061077 aacttgcttgctattctgattctcttgcttgcatcaaccttattaatggtcccattgaaaggtaccatatctacattgttctcatccaagacataaaaca 35060978  T
Q  103 -atgcttcaacaaaccaatgcaacggtttctcacactcttagagaggggaaccattgtgcagactacatgaaaaagcttggagcttattctgatgtggaa 201  Q
     ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||| ||||||||  |||| | | ||||| |||||||||||||    
T  35060977 aatgcttcaacaaaccaatgtaacagtttctcacactcttagagagaggaaccattgtgcaaactacatggcaaagttagtagcttcttctgatgtggaa 35060878  T
Q  202 cttcttcgtcatgatgt 218  Q
    || |||| |||||||||    
T  35060877 ctccttcttcatgatgt 35060861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 127 - 216
Target Start/End: Original strand, 3276057 - 3276146
Alignment:
Q  127 gtttctcacactcttagagaggggaaccattgtgcagactacatgaaaaagcttggagcttattctgatgtggaacttcttcgtcatgat 216  Q
    |||||||||||| ||||||||| ||| || |||||||| || |||  ||| |||||||||| ||||||||| |||||||||| |||||||    
T  3276057 gtttctcacacttttagagaggagaatcaatgtgcagattatatggcaaaacttggagcttcttctgatgttgaacttcttcttcatgat 3276146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 43111840 - 43111769
Alignment:
Q  19 ttgcttgctattctgattctcttgcttgtatcaaccttattaatggtcccattgagagataccatatctatg 90  Q
    |||||||||||| ||||||||||| ||| || || ||||||||||   |||||||||| |||||||| ||||    
T  43111840 ttgcttgctattgtgattctcttgtttgcattaatcttattaatgactccattgagaggtaccatatatatg 43111769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 208
Target Start/End: Original strand, 29339769 - 29339853
Alignment:
Q  124 acggtttctcacactcttagagaggggaaccattgtgcagactacatgaaaaagcttggagcttattctgatgtggaacttcttc 208  Q
    |||||||||||| |||||||||||||||| ||  ||||| ||| ||||  |||||||| | |||||||| |||| || |||||||    
T  29339769 acggtttctcacgctcttagagaggggaaacagcgtgcaaacttcatggcaaagcttgaatcttattctaatgttgatcttcttc 29339853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 197
Target Start/End: Complemental strand, 18888978 - 18888905
Alignment:
Q  124 acggtttctcacactcttagagaggggaaccattgtgcagactacatgaaaaagcttggagcttattctgatgt 197  Q
    ||||||||||| || |||||||| ||||||||  ||||||| | |||||  || |||||||||| |||||||||    
T  18888978 acggtttctcatacgcttagagatgggaaccaaagtgcagatttcatgatgaaacttggagcttcttctgatgt 18888905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University