View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2273_low_19 (Length: 237)
Name: NF2273_low_19
Description: NF2273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2273_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 30048796 - 30049009
Alignment:
| Q |
1 |
actgcaaataagaattggttgaaagaaatcaacactagaagaaacagcaaggtgaagcttgcatatcatagaacactagttggaaaaggtatgggaaaga |
100 |
Q |
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| T |
30048796 |
actgcaaataagaattggttgaaagaaatcaacacgggaagaaacagcaaggtgaagcttgcatatcatagaacactagttggaaaaggcatgggaaaga |
30048895 |
T |
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| Q |
101 |
ttgttattgaaagaaagaatggaaaattaatagtaatttaagatgtgatttatattatggggatgtaatgcaacttgttgagtgtaggtcaatttatgca |
200 |
Q |
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| T |
30048896 |
ttgttattgaaagaaagaatggaaaattaatagtaatttaagatgtgatttatattatggggatgtaatgcaacttgttgagtgtaggtcaattggtgca |
30048995 |
T |
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| Q |
201 |
aaagggctattcag |
214 |
Q |
| |
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|||||||||||||| |
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| T |
30048996 |
aaagggctattcag |
30049009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 15065438 - 15065378
Alignment:
| Q |
65 |
atcatagaacactagttggaaaaggtatgggaaagattgttattgaaagaaagaatggaaa |
125 |
Q |
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| T |
15065438 |
atcatagaacactagttgcagaaggaatgaggaagattgttattgacggaaagagtggaaa |
15065378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 23255072 - 23255132
Alignment:
| Q |
65 |
atcatagaacactagttggaaaaggtatgggaaagattgttattgaaagaaagaatggaaa |
125 |
Q |
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| T |
23255072 |
atcatagaacactagttgcagaaggaatggggaatattgctattgaaggaaagaatggaaa |
23255132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 203
Target Start/End: Complemental strand, 10683199 - 10683065
Alignment:
| Q |
69 |
tagaacactagttggaaaaggtatgggaaagattgttattgaaagaaagaatggaaaattaatagtaatttaagatgtgatttatattatggggatgtaa |
168 |
Q |
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|||||| || |||| | |||| |||||||| |||| |||||| | |||| ||||||| ||| ||||| |||||||||| ||| ||| |||||| || |
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| T |
10683199 |
tagaaccctggttgcagaaggcatgggaaaaattgcaattgaaggcaagattggaaaaataactataattgaagatgtgatatatgttactgggatgcaa |
10683100 |
T |
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| Q |
169 |
tgcaacttgttgagtgtaggtcaatttatgcaaaa |
203 |
Q |
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| T |
10683099 |
tgtaacttgctcagtgtaggtcaacttgtgcaaaa |
10683065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 146
Target Start/End: Complemental strand, 22930447 - 22930349
Alignment:
| Q |
48 |
caaggtgaagcttgcatatcatagaacactagttggaaaaggtatgggaaagattgttattgaaagaaagaatggaaaattaatagtaatttaagatgt |
146 |
Q |
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|||||||||||||| |||||| |||| |||||| | |||| ||||||||||| ||||||| |||||||| ||| |||| | |||||| ||||||| |
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| T |
22930447 |
caaggtgaagcttgttgatcatacaacattagttgcagaaggcatgggaaagatatctattgaaggaaagaattgaagattagttgtaattgaagatgt |
22930349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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