View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2273_low_2 (Length: 565)
Name: NF2273_low_2
Description: NF2273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2273_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 516; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 2 - 529
Target Start/End: Original strand, 28104069 - 28104596
Alignment:
| Q |
2 |
cagtttgtgttattcgagtcagtggtgttctgctgtatttctttttgcgttttgctgccttggtttattttcctggtcactccaaatccttttggacggt |
101 |
Q |
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| T |
28104069 |
cagtttgtgttattcgagtcagtggtgttctgctgtatttctttttgcgttttgctgccttggtttattttcctggtcactccaaatccttttggacggt |
28104168 |
T |
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| Q |
102 |
tgtgccaattttgtttttgagcggtggtgtggtgtgttggcaggtttggctatgaacggtggtttttggtcagcagattttgtactgcacagtggctttt |
201 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28104169 |
tgtgccagttttgtttttgagcggtggtgtggtgtgttggcaggtttggctatgaacggtggtttttggtcagcagattttgtactgcacagtggctttt |
28104268 |
T |
|
| Q |
202 |
tgttcttgctgcaattcattttatggctgctatattttttgctacggttttgtgacttctgcagagctttgttctgttagtatttagcttttgatgcctt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28104269 |
tgttcttgctgcaattcattttatggctgctatattttttgctacggttttgtgacttctgcagagctttgttctgttagtatttagcttttgatgcctt |
28104368 |
T |
|
| Q |
302 |
tttgtggcttagtgttattaggctttgtttttggctttggggaaatttcgcttgttgttctgtttcaaatgagcgtggtatatctgtcatatgctttatt |
401 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28104369 |
tttgtggcttagtgttattaggctttgtttttggctgtggggaaatttcgcttgttgttctgtttcaaatgagggtggtatatctgtcatatgctttatt |
28104468 |
T |
|
| Q |
402 |
tgaacattggctgtttatcggctcatgtagtttgtaattttgaacacaattccggattgtcttgtacttggattggattaattgaaattttatttgcctt |
501 |
Q |
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| T |
28104469 |
tgaacattggctgtttatcggctcatgtagtttgtaattttgaacacaattccggattgtcttgtacttggattggattaattgaaattttatttgcctt |
28104568 |
T |
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| Q |
502 |
tcaaaaataaataaattcaagtcaacgc |
529 |
Q |
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| T |
28104569 |
tcaaaaataaataaattcaagtcaacgc |
28104596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 2 - 544
Target Start/End: Original strand, 26640995 - 26641540
Alignment:
| Q |
2 |
cagtttgtgttattcgagtcagtggtgttctgctgtatttctttttgcgttttgctgccttggtttattttcctggtcactccaaatccttttggacggt |
101 |
Q |
| |
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|||||||| ||||| ||||||||||||||||| || ||| |||||| ||| ||||||||||||||| ||||||||||||||||||| ||||||| || |
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| T |
26640995 |
cagtttgtattatttgagtcagtggtgttctgttgcatta-tttttgtgtt---ctgccttggtttattgtcctggtcactccaaatccgtttggactgt |
26641090 |
T |
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| Q |
102 |
tgtgccaattttgtttttgagcggtggtgtggtgtgttggcaggtttggctatgaacggtggtttttgg-tcagcagattttgtactgcacagtggcttt |
200 |
Q |
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||||||| ||||| |||||||||||||||||||| |||||||||||||||| | | |||||||||| | || ||||||||||||| ||| ||||||||| |
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| T |
26641091 |
tgtgccagttttgattttgagcggtggtgtggtgcgttggcaggtttggctttaagtggtggtttttcgatctgcagattttgtaccgcatagtggcttt |
26641190 |
T |
|
| Q |
201 |
ttgttcttgctgcaattcattttatggctgctatattttttgctacggttttgtgacttctgcagagctttgttctgttagtatttagcttttgatgcct |
300 |
Q |
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|||| ||||||||||| |||| || ||||||||||||| | |||| |||||||||||||||| ||||||||||| ||||||||||||||| |||||| | |
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| T |
26641191 |
ttgtacttgctgcaatgcattctaaggctgctatatttggttctacagttttgtgacttctgctgagctttgttccgttagtatttagcttctgatgctt |
26641290 |
T |
|
| Q |
301 |
ttttgtggcttagtgttattaggctttgtttttggctttggggaaatttcgcttgttgttctgtttcaaatgagcgtggtatatctgtcatatgctttat |
400 |
Q |
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|| ||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
26641291 |
ttctgtggcttagtattattaggctttgtttttggctttggggcaatttccgttgttgttctgtttcaagtgagcgtggtgtatctgtcatatgctttat |
26641390 |
T |
|
| Q |
401 |
ttgaacattggctgtttatcggctcatgtag------tttgtaattttgaacacaattccggattgtcttgtacttggattggattaattgaaattttat |
494 |
Q |
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||||| ||||||||||||||||||||||||| |||||||||||| |||||||||| | | ||||||| || |||||||||||||||||||||||| |
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| T |
26641391 |
ttgaagattggctgtttatcggctcatgtagtttgtatttgtaattttggacacaattcccgttcgtcttgtgctaggattggattaattgaaattttat |
26641490 |
T |
|
| Q |
495 |
ttgcctttcaaaaataaataaattcaagtcaacgccaaaatttgtgtaga |
544 |
Q |
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||| ||||||||||||||||||||||||| | | |||||||||||||| |
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| T |
26641491 |
ttgatgttcaaaaataaataaattcaagtcagcactaaaatttgtgtaga |
26641540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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