View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2273_low_23 (Length: 235)
Name: NF2273_low_23
Description: NF2273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2273_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 10342126 - 10342350
Alignment:
| Q |
1 |
acaaccaaaagaatttcacccttctgccttaagaatcatggcatcatcaccattcagttaatcttgtttcaaccaagcaagaaatttgtcaaaagtaaac |
100 |
Q |
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| T |
10342126 |
acaaccaaaagaatttcacccttctgccttaagaatcatggcatcatcaccattcagttaatcttgtttcaaccaagcaagaaatttgtcaaaagtaaac |
10342225 |
T |
|
| Q |
101 |
aaaaaagattctatgtttggtactttggtttatgaaccagataccacaagagttcaagaataa-----ttcaattcaaatattttgcatgtgagaaaagc |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||| |
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| T |
10342226 |
aaaaaagattctatgtttggtactttggtttatgaaccagataccacaagagctcaagaataatatgttggggttcaaatattttgcatgtgagaaaagc |
10342325 |
T |
|
| Q |
196 |
aaaggctgcattctgagactgggaa |
220 |
Q |
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|||||||||||||||||| |||||| |
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| T |
10342326 |
aaaggctgcattctgagattgggaa |
10342350 |
T |
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