View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2273_low_3 (Length: 532)
Name: NF2273_low_3
Description: NF2273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2273_low_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 20 - 532
Target Start/End: Original strand, 32095909 - 32096426
Alignment:
| Q |
20 |
ctagggtcatggcttgagatgatatatatgtacatattaagccaatgta-----gatgccaaaatcataatcattacctgtttagatttacagtgagatt |
114 |
Q |
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| T |
32095909 |
ctagggtcatggcttgagatgatatatatgtacatattaagccaatgtatacgagatgccaaaatcataatcattacctgtttagattcacagtgagatt |
32096008 |
T |
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| Q |
115 |
gacataatcattctggttttggcaaagtcaccgttgatccaaatatatatttggattaacaataagtttgacagaatcacactataccactattgttttg |
214 |
Q |
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| T |
32096009 |
gacataatcattctgattttggcaaattcaccgttgattcaaacatatatttggattaacaataagtttgacagaatcacactgtaccactattgttttg |
32096108 |
T |
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| Q |
215 |
tcaaaaatcactctttaaaactttaagaaaatcacgatatcactgtgattttatcaaactcatcgtcaatttcaatcatgcactaaatgttgtgaggtat |
314 |
Q |
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| T |
32096109 |
ccaaaaattactctttaaaactttaaaaaaattacgatatcactgtgattttatcaaactcatcgtcaatttcaatcatgcactaaatgttgtgaggtat |
32096208 |
T |
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| Q |
315 |
aatttggttaagtgctctcttaacttcaacaatactaactttcttcccatttccaccattttccttcaccttagccctcaactccgcaacaaaaacacca |
414 |
Q |
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| T |
32096209 |
aatttggttaagtgctctcttaacttccacaatactaactttcttcccatttccaccattttccttcaccttagccctcaactccgcaacaaaaacacca |
32096308 |
T |
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| Q |
415 |
ttattaagcgaagattgaactccaataacctcaatcctcaactccctcaacattaccataacatcaagcaacaatccttctctatgcaaacactcaatct |
514 |
Q |
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| T |
32096309 |
ttattaagcgaagattgaactccaataacctcaatcctcaactccctcaacattaccataacgtcaagcaacaatccttctctatgcaaacactcaatct |
32096408 |
T |
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| Q |
515 |
ccaacaaagcatcactct |
532 |
Q |
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| T |
32096409 |
ccaacaaagcatcactct |
32096426 |
T |
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