View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2273_low_4 (Length: 499)

Name: NF2273_low_4
Description: NF2273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2273_low_4
NF2273_low_4
[»] chr3 (8 HSPs)
chr3 (25-295)||(23937347-23937612)
chr3 (365-470)||(23937682-23937786)
chr3 (17-67)||(37611472-37611522)
chr3 (24-67)||(188657-188700)
chr3 (27-90)||(6093237-6093299)
chr3 (38-90)||(918794-918845)
chr3 (38-90)||(44072801-44072852)
chr3 (13-88)||(30766378-30766452)
[»] chr4 (10 HSPs)
chr4 (17-69)||(16895879-16895931)
chr4 (17-67)||(33486458-33486508)
chr4 (17-67)||(43014668-43014718)
chr4 (38-90)||(10259418-10259469)
chr4 (38-90)||(24077487-24077538)
chr4 (38-90)||(26924357-26924408)
chr4 (38-90)||(43332507-43332558)
chr4 (38-90)||(51452574-51452625)
chr4 (36-90)||(28120278-28120331)
chr4 (38-88)||(21564986-21565035)
[»] chr1 (3 HSPs)
chr1 (24-79)||(3929814-3929869)
chr1 (17-67)||(20767470-20767520)
chr1 (17-67)||(26429200-26429250)
[»] chr8 (6 HSPs)
chr8 (17-67)||(11697023-11697073)
chr8 (38-90)||(20663012-20663063)
chr8 (38-90)||(30548375-30548426)
chr8 (38-90)||(44213129-44213180)
chr8 (24-90)||(4634880-4634944)
chr8 (26-90)||(12661051-12661114)
[»] chr7 (8 HSPs)
chr7 (17-67)||(12960521-12960571)
chr7 (17-67)||(27840428-27840478)
chr7 (38-90)||(20765507-20765558)
chr7 (38-90)||(29491085-29491136)
chr7 (38-90)||(19033740-19033791)
chr7 (38-90)||(20720845-20720896)
chr7 (38-90)||(34282188-34282239)
chr7 (53-90)||(33230046-33230082)
[»] chr5 (3 HSPs)
chr5 (17-67)||(22602712-22602762)
chr5 (17-67)||(36366202-36366252)
chr5 (38-90)||(37464476-37464527)
[»] chr6 (7 HSPs)
chr6 (17-67)||(11272676-11272726)
chr6 (17-67)||(11470850-11470900)
chr6 (17-66)||(18389232-18389281)
chr6 (38-90)||(250020-250071)
chr6 (26-90)||(2624815-2624878)
chr6 (38-90)||(12579871-12579922)
chr6 (38-90)||(33979081-33979132)
[»] chr2 (6 HSPs)
chr2 (38-98)||(35357696-35357755)
chr2 (17-66)||(7364708-7364757)
chr2 (26-88)||(32726085-32726146)
chr2 (45-90)||(24278957-24279001)
chr2 (38-90)||(11866311-11866362)
chr2 (53-90)||(3711069-3711105)
[»] scaffold0103 (1 HSPs)
scaffold0103 (38-90)||(12920-12971)


Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 25 - 295
Target Start/End: Original strand, 23937347 - 23937612
Alignment:
Q  25 cttttcatgaatcaagacttggtagagctttcataaatatttttgataaa-gatttataatgtttgtacagtattaagatgttgacggaaccttaaatta 123  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||        ||||| ||||||||||||||||    
T  23937347 cttttcatgaatcaagacttagtagagctttcataaatatttttgataaaagatttataatgtttgtaca--------atgtttacggaaccttaaatta 23937438  T
Q  124 ccaaatgatatagaaataaagatttctgaagaatatatggaaagttatgtggacatcaatactctacaaaa--atgaggtggactatactttagaaaata 221  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  || ||   |||| ||||||||||||||    
T  23937439 ccaaatgatatagaaataaagatttgtgaagaatatatggaaagttatgtggacatcaatactctacaaaaatataagagagactgtactttagaaaata 23937538  T
Q  222 tgatgggtgacatttaatggatgaatatataatttttatgtacaccgagggaaatataatagatttagatttga 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23937539 tgatgggtgacatttaatggatgaatatataatttttatgtacaccgagggaaatataatatatttagatttga 23937612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 365 - 470
Target Start/End: Original strand, 23937682 - 23937786
Alignment:
Q  365 cacaagaattaccaggtatcattagtttgtatcatagcactaagattgaataataactaaaatgggcaacttattaaaatctagtattttttcagatgaa 464  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23937682 cacaagaattaccaggtatcagtagtttgtatcatagcactaagattgaataataactaaaatgggcaacttattaaaatctagta-tttttcagatgaa 23937780  T
Q  465 tagtgt 470  Q
    ||||||    
T  23937781 tagtgt 23937786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 37611522 - 37611472
Alignment:
Q  17 tataccctcttttcatgaatcaagacttggtagagctttcataaatatttt 67  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  37611522 tatatcctcttttcatgaatcaagacttggtagagctttcataaatatttt 37611472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 188657 - 188700
Alignment:
Q  24 tcttttcatgaatcaagacttggtagagctttcataaatatttt 67  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  188657 tcttttcatgaatcaagacttggtagaactttcataaatatttt 188700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 6093299 - 6093237
Alignment:
Q  27 tttcatgaatcaagacttggtagagctttcataaatatttttgataaagatttataatgtttgt 90  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| |||| |||| ||||||||||    
T  6093299 tttcatgaatcaagacttgatagagctttcataaata-ttttggtaaaaatttctaatgtttgt 6093237  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 918794 - 918845
Alignment:
Q  38 aagacttggtagagctttcataaatatttttgataaagatttataatgtttgt 90  Q
    |||||||| || |||||||||||||||||| ||||||||||||||||||||||    
T  918794 aagacttgataaagctttcataaatatttt-gataaagatttataatgtttgt 918845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 44072852 - 44072801
Alignment:
Q  38 aagacttggtagagctttcataaatatttttgataaagatttataatgtttgt 90  Q
    |||||||| || |||||||||||||||||| ||||||||||||||||||||||    
T  44072852 aagacttgataaagctttcataaatatttt-gataaagatttataatgtttgt 44072801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 30766378 - 30766452
Alignment:
Q  13 aaaatataccctcttttcatgaatcaagacttggtagagctttcataaatatttttgataaagatttataatgttt 88  Q
    ||||||||  |||||||||| |||||||||||||||  |||||  |||||| |||||||||| |||| ||||||||    
T  30766378 aaaatatatgctcttttcatcaatcaagacttggtaaggctttggtaaata-ttttgataaatatttctaatgttt 30766452  T

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Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 16895879 - 16895931
Alignment:
Q  17 tataccctcttttcatgaatcaagacttggtagagctttcataaatatttttg 69  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16895879 tatatcctcttttcatgaatcaagacttggtagagctttcataaatatttttg 16895931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 33486508 - 33486458
Alignment:
Q  17 tataccctcttttcatgaatcaagacttggtagagctttcataaatatttt 67  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33486508 tatatcctcttttcatgaatcaagacttggtagagctttcataaatatttt 33486458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 43014718 - 43014668
Alignment:
Q  17 tataccctcttttcatgaatcaagacttggtagagctttcataaatatttt 67  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43014718 tatatcctcttttcatgaatcaagacttggtagagctttcataaatatttt 43014668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 10259469 - 10259418
Alignment:
Q  38 aagacttggtagagctttcataaatatttttgataaagatttataatgtttgt 90  Q
    |||||||| || |||||||||||||||||| ||||||||||||||||||||||    
T  10259469 aagacttgataaagctttcataaatatttt-gataaagatttataatgtttgt 10259418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 24077538 - 24077487
Alignment:
Q  38 aagacttggtagagctttcataaatatttttgataaagatttataatgtttgt 90  Q
    |||||||| || |||||||||||||||||| ||||||||||||||||||||||    
T  24077538 aagacttgataaagctttcataaatatttt-gataaagatttataatgtttgt 24077487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 26924408 - 26924357
Alignment:
Q  38 aagacttggtagagctttcataaatatttttgataaagatttataatgtttgt 90  Q
    |||||||| || |||||||||||||||||| ||||||||||||||||||||||    
T  26924408 aagacttgataaagctttcataaatatttt-gataaagatttataatgtttgt 26924357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 43332507 - 43332558
Alignment:
Q  38 aagacttggtagagctttcataaatatttttgataaagatttataatgtttgt 90  Q
    |||||||| || |||||||||||||||||| ||||||||||||||||||||||    
T  43332507 aagacttgataaagctttcataaatatttt-gataaagatttataatgtttgt 43332558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 51452574 - 51452625
Alignment:
Q  38 aagacttggtagagctttcataaatatttttgataaagatttataatgtttgt 90  Q
    |||||||| || |||||||||||||||||| ||||||||||||||||||||||    
T  51452574 aagacttgataaagctttcataaatatttt-gataaagatttataatgtttgt 51452625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 28120331 - 28120278
Alignment:
Q  36 tcaagacttggtagagctttcataaatatttttgataaagatttataatgtttgt 90  Q
    ||||||||||||| | |||||||||||||| | ||||||||||||||||||||||    
T  28120331 tcaagacttggtaaaactttcataaatattct-gataaagatttataatgtttgt 28120278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 21564986 - 21565035
Alignment:
Q  38 aagacttggtagagctttcataaatatttttgataaagatttataatgttt 88  Q
    |||||||| || | |||||||||||||||| ||||||||||||||||||||    
T  21564986 aagacttgataaaactttcataaatatttt-gataaagatttataatgttt 21565035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 3929869 - 3929814
Alignment:
Q  24 tcttttcatgaatcaagacttggtagagctttcataaatatttttgataaagattt 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  3929869 tcttttcatgaatcaagacttggtagagctttcataaatatttttggtaaatattt 3929814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 20767470 - 20767520
Alignment:
Q  17 tataccctcttttcatgaatcaagacttggtagagctttcataaatatttt 67  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  20767470 tatatcctcttttcatgaatcaagacttggtagagctttcataaatatttt 20767520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 26429250 - 26429200
Alignment:
Q  17 tataccctcttttcatgaatcaagacttggtagagctttcataaatatttt 67  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26429250 tatatcctcttttcatgaatcaagacttggtagagctttcataaatatttt 26429200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 11697023 - 11697073
Alignment:
Q  17 tataccctcttttcatgaatcaagacttggtagagctttcataaatatttt 67  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11697023 tatatcctcttttcatgaatcaagacttggtagagctttcataaatatttt 11697073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 20663063 - 20663012
Alignment:
Q  38 aagacttggtagagctttcataaatatttttgataaagatttataatgtttgt 90  Q
    |||||||| || |||||||||||||||||| ||||||||||||||||||||||    
T  20663063 aagacttgataaagctttcataaatatttt-gataaagatttataatgtttgt 20663012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 30548426 - 30548375
Alignment:
Q  38 aagacttggtagagctttcataaatatttttgataaagatttataatgtttgt 90  Q
    |||||||| || |||||||||||||||||| ||||||||||||||||||||||    
T  30548426 aagacttgataaagctttcataaatatttt-gataaagatttataatgtttgt 30548375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 44213180 - 44213129
Alignment:
Q  38 aagacttggtagagctttcataaatatttttgataaagatttataatgtttgt 90  Q
    |||||||| || |||||||||||||||||| ||||||||||||||||||||||    
T  44213180 aagacttgataaagctttcataaatatttt-gataaagatttataatgtttgt 44213129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 90
Target Start/End: Complemental strand, 4634944 - 4634880
Alignment:
Q  24 tcttttcatgaatcaagacttggtagagctttcataaatatttttgataaagatttataatgtttgt 90  Q
    |||||||||||||||| |||||||| ||||||||||||||  ||||||||||||  ||| |||||||    
T  4634944 tcttttcatgaatcaatacttggtaaagctttcataaata--tttgataaagataaatagtgtttgt 4634880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 12661114 - 12661051
Alignment:
Q  26 ttttcatgaatcaagacttggtagagctttcataaatatttttgataaagatttataatgtttgt 90  Q
    ||||||||||||||||||||| |  ||||||||||||| ||| |||||| |||| ||||||||||    
T  12661114 ttttcatgaatcaagacttggaaaggctttcataaata-tttggataaatatttctaatgtttgt 12661051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 12960521 - 12960571
Alignment:
Q  17 tataccctcttttcatgaatcaagacttggtagagctttcataaatatttt 67  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12960521 tatatcctcttttcatgaatcaagacttggtagagctttcataaatatttt 12960571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 27840428 - 27840478
Alignment:
Q  17 tataccctcttttcatgaatcaagacttggtagagctttcataaatatttt 67  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27840428 tatatcctcttttcatgaatcaagacttggtagagctttcataaatatttt 27840478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 20765507 - 20765558
Alignment:
Q  38 aagacttggtagagctttcataaatatttttgataaagatttataatgtttgt 90  Q
    |||||||| || |||||||||||||||||| ||||||||||||||||||||||    
T  20765507 aagacttgataaagctttcataaatatttt-gataaagatttataatgtttgt 20765558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 29491085 - 29491136
Alignment:
Q  38 aagacttggtagagctttcataaatatttttgataaagatttataatgtttgt 90  Q
    |||||||| || |||||||||||||||||| ||||||||||||||||||||||    
T  29491085 aagacttgataaagctttcataaatatttt-gataaagatttataatgtttgt 29491136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 19033791 - 19033740
Alignment:
Q  38 aagacttggtagagctttcataaatatttttgataaagatttataatgtttgt 90  Q
    |||||||| || |||||||||||||||||| |||||| |||||||||||||||    
T  19033791 aagacttgataaagctttcataaatatttt-gataaaaatttataatgtttgt 19033740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 20720845 - 20720896
Alignment:
Q  38 aagacttggtagagctttcataaatatttttgataaagatttataatgtttgt 90  Q
    |||||||| || |||||||||||||| |||||||||| |||||||||||||||    
T  20720845 aagacttgataaagctttcataaata-ttttgataaaaatttataatgtttgt 20720896  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 34282239 - 34282188
Alignment:
Q  38 aagacttggtagagctttcataaatatttttgataaagatttataatgtttgt 90  Q
    |||||||| || | |||||||||||||||| ||||||||||||||||||||||    
T  34282239 aagacttgataaaactttcataaatatttt-gataaagatttataatgtttgt 34282188  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 33230082 - 33230046
Alignment:
Q  53 tttcataaatatttttgataaagatttataatgtttgt 90  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  33230082 tttcataaatatttt-gataaagatttataatgtttgt 33230046  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 22602762 - 22602712
Alignment:
Q  17 tataccctcttttcatgaatcaagacttggtagagctttcataaatatttt 67  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  22602762 tatatcctcttttcatgaatcaagacttggtagagctttcataaatatttt 22602712  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 36366252 - 36366202
Alignment:
Q  17 tataccctcttttcatgaatcaagacttggtagagctttcataaatatttt 67  Q
    |||| ||| ||||||||||||||||||||||| ||||||||||||||||||    
T  36366252 tatatcctattttcatgaatcaagacttggtaaagctttcataaatatttt 36366202  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 37464476 - 37464527
Alignment:
Q  38 aagacttggtagagctttcataaatatttttgataaagatttataatgtttgt 90  Q
    |||||||| || || ||||||||||||||| |||||||||||||||| |||||    
T  37464476 aagacttgataaagttttcataaatatttt-gataaagatttataatttttgt 37464527  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 11272676 - 11272726
Alignment:
Q  17 tataccctcttttcatgaatcaagacttggtagagctttcataaatatttt 67  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  11272676 tatatcctcttttcatgaatcaagatttggtagagctttcataaatatttt 11272726  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 11470900 - 11470850
Alignment:
Q  17 tataccctcttttcatgaatcaagacttggtagagctttcataaatatttt 67  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  11470900 tatatcctctgttcatgaatcaagacttggtagagctttcataaatatttt 11470850  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 18389281 - 18389232
Alignment:
Q  17 tataccctcttttcatgaatcaagacttggtagagctttcataaatattt 66  Q
    |||| ||||||||||||||||||||||||||||||||||  |||||||||    
T  18389281 tatatcctcttttcatgaatcaagacttggtagagctttggtaaatattt 18389232  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 250020 - 250071
Alignment:
Q  38 aagacttggtagagctttcataaatatttttgataaagatttataatgtttgt 90  Q
    |||||||| || |||||||||||||||||| ||||||||||||||||||||||    
T  250020 aagacttgataaagctttcataaatatttt-gataaagatttataatgtttgt 250071  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 2624878 - 2624815
Alignment:
Q  26 ttttcatgaatcaagacttggtagagctttcataaatatttttgataaagatttataatgtttgt 90  Q
    ||||||| |||||||||||||||  ||||||||||||| |||||||||| |||| ||||||||||    
T  2624878 ttttcataaatcaagacttggtaaggctttcataaata-ttttgataaatatttttaatgtttgt 2624815  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 12579922 - 12579871
Alignment:
Q  38 aagacttggtagagctttcataaatatttttgataaagatttataatgtttgt 90  Q
    |||||||| || |||||||||||||||||| ||||||||||||||||||||||    
T  12579922 aagacttgataaagctttcataaatatttt-gataaagatttataatgtttgt 12579871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 33979081 - 33979132
Alignment:
Q  38 aagacttggtagagctttcataaatatttttgataaagatttataatgtttgt 90  Q
    |||||||| || | |||||||||||||||| ||||||||||||||||||||||    
T  33979081 aagacttgataaaactttcataaatatttt-gataaagatttataatgtttgt 33979132  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 35357755 - 35357696
Alignment:
Q  38 aagacttggtagagctttcataaatatttttgataaagatttataatgtttgtacagtatt 98  Q
    |||||||| || |||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  35357755 aagacttgataaagctttcataaatatttt-gataaagatttataatgtttgtacaatatt 35357696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 7364708 - 7364757
Alignment:
Q  17 tataccctcttttcatgaatcaagacttggtagagctttcataaatattt 66  Q
    |||| ||||||||||||||||||||||||||||||||||  |||||||||    
T  7364708 tatatcctcttttcatgaatcaagacttggtagagctttggtaaatattt 7364757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 32726146 - 32726085
Alignment:
Q  26 ttttcatgaatcaagacttggtagagctttcataaatatttttgataaagatttataatgttt 88  Q
    |||||||||||||||||||| |||||||||| |||||| ||||| |||| |||| ||||||||    
T  32726146 ttttcatgaatcaagacttgatagagctttcgtaaata-ttttggtaaaaatttctaatgttt 32726085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 24278957 - 24279001
Alignment:
Q  45 ggtagagctttcataaatatttttgataaagatttataatgtttgt 90  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||    
T  24278957 ggtaaagctttcataaatatttt-gataaagatttataatgtttgt 24279001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 11866362 - 11866311
Alignment:
Q  38 aagacttggtagagctttcataaatatttttgataaagatttataatgtttgt 90  Q
    |||||||| || || ||||||||||||||| ||||||||||||||||||||||    
T  11866362 aagacttgataaagttttcataaatatttt-gataaagatttataatgtttgt 11866311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 3711069 - 3711105
Alignment:
Q  53 tttcataaatatttttgataaagatttataatgtttgt 90  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  3711069 tttcataaatatttt-gataaagatttataatgtttgt 3711105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 12920 - 12971
Alignment:
Q  38 aagacttggtagagctttcataaatatttttgataaagatttataatgtttgt 90  Q
    |||||||||||  ||||||||||||| |||||||||| |||| ||||||||||    
T  12920 aagacttggtaaggctttcataaata-ttttgataaatatttttaatgtttgt 12971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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