View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2273_low_5 (Length: 454)
Name: NF2273_low_5
Description: NF2273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2273_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 16 - 445
Target Start/End: Original strand, 48105683 - 48106137
Alignment:
| Q |
16 |
agaataagcctctcttagtacctcttcaaaatactctgcctacataacaa---ataagaatcacaagagaaatcaatgttcattttatacttgttcgtgt |
112 |
Q |
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| T |
48105683 |
agaataagcctctcttagtacctcttcaaaatactctgcctacataacaacaaataagaatcacaagagaaatcaatgttcattttatacttcttcgtgt |
48105782 |
T |
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| Q |
113 |
tactgcgaaaacattttcccgtttt----------------------gtaataaacatacctgatttggctgaggatccaaactggcttctgtgagccat |
190 |
Q |
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| T |
48105783 |
tactgcgaaaacattttcccgttttatcctatattagattatgttgagtaataaacatacctgatttggctgaggatccaaactggcttctgtgagccat |
48105882 |
T |
|
| Q |
191 |
attggaaatccaatattaccaagaaaatctagacctgacctcatgtaagcaagatttggctggccacttgcaaaatggccttgcaatcctatggcaaata |
290 |
Q |
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| T |
48105883 |
attggaaatccaatattaccaagaaaatctagacctgacctcatgtaagcaagatttggctggccacttgcaaaatggccttgcaatcctatggcaaata |
48105982 |
T |
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| Q |
291 |
atatttcagtagcttctccatattgcataatctcctcaagttttttgagatagttgggtgggctaacaactttatctccactatattcaatagtattata |
390 |
Q |
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| T |
48105983 |
atatttcagtagcttctccagattgcataatctcctcaagttttttgagatagttgggtgggctaacaactttatctccactatattcaatagtattata |
48106082 |
T |
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| Q |
391 |
ctcattcataaacaatgttgtttctggatcaagctcatgagcttttaaatagtat |
445 |
Q |
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| T |
48106083 |
ctcattcataaacaattttgtttctggatcaagctcatgagcttttaaatagtat |
48106137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 144 - 295
Target Start/End: Original strand, 48062201 - 48062352
Alignment:
| Q |
144 |
aacatacctgatttggctgaggatccaaactggcttctgtgagccatattggaaatccaatattaccaagaaaatctagacctgacctcatgtaagcaag |
243 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||||||||||| |||| |||| | |||||| ||| |||||||||||||| || |||| |
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| T |
48062201 |
aacatacctgatttggctgaggatccacactggtttctgtgagccatataggaagtccagttgctgcaagaagatcaagacctgacctcatatatgcaat |
48062300 |
T |
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| Q |
244 |
atttggctggccacttgcaaaatggccttgcaatcctatggcaaataatatt |
295 |
Q |
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| T |
48062301 |
gtttggcacgccacttgaaaaatggcactgcaaccctatggccaatgatatt |
48062352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 147 - 275
Target Start/End: Original strand, 48066293 - 48066421
Alignment:
| Q |
147 |
atacctgatttggctgaggatccaaactggcttctgtgagccatattggaaatccaatattaccaagaaaatctagacctgacctcatgtaagcaagatt |
246 |
Q |
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| T |
48066293 |
atacctgatttggattagaatccacactactttcagtgagccatataggaagtccagttgcaccaagaagatctagacctgacctcatgtaagcaatgtt |
48066392 |
T |
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| Q |
247 |
tggctggccacttgcaaaatggccttgca |
275 |
Q |
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|||| ||| | || |||||||||||||| |
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| T |
48066393 |
tggcacgccgcgtgaaaaatggccttgca |
48066421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 147 - 241
Target Start/End: Original strand, 48099238 - 48099332
Alignment:
| Q |
147 |
atacctgatttggctgaggatccaaactggcttctgtgagccatattggaaatccaatattaccaagaaaatctagacctgacctcatgtaagca |
241 |
Q |
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||||||||||||| ||||||| | ||| | ||||||||||||||| |||| |||| | |||||||| |||||||| |||||||||||||||| |
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| T |
48099238 |
atacctgatttggttgaggattgacacttgtttctgtgagccatataggaagtccagttgcaccaagaagatctagacttgacctcatgtaagca |
48099332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 147 - 275
Target Start/End: Original strand, 50230962 - 50231090
Alignment:
| Q |
147 |
atacctgatttggctgaggatccaaactggcttctgtgagccatattggaaatccaatattaccaagaaaatctagacctgacctcatgtaagcaagatt |
246 |
Q |
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||||||||||||| | || ||||| ||| ||| ||||||||||| |||| |||| | ||||||| |||||||||||||||||||||||||| || |
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| T |
50230962 |
atacctgatttggattagaatccacactactttcagtgagccatataggaagtccagttgcaccaagatgatctagacctgacctcatgtaagcaatgtt |
50231061 |
T |
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| Q |
247 |
tggctggccacttgcaaaatggccttgca |
275 |
Q |
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|||| ||| |||| ||||||||||||| |
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| T |
50231062 |
tggcatgccgcttgacaaatggccttgca |
50231090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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