View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2273_low_7 (Length: 377)
Name: NF2273_low_7
Description: NF2273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2273_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 369
Target Start/End: Complemental strand, 25524512 - 25524159
Alignment:
| Q |
16 |
cggggtactactctatggattgattttgcctactgcttgttactcaatggagaggttgaaacaacagagagatgatccccacgtttaccttccattattt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25524512 |
cggggtactactctatggattgattttgcctactgcttgttactcaatggagagattgaaacaacagagagatgatccccacgtttaccttccattattt |
25524413 |
T |
|
| Q |
116 |
gtctcatgtgaagacaacattgatagcacgttttgtgtgtttgtttcgttatgcaccctgctttgaagttaataatgctttttggtgccagtttagttat |
215 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
25524412 |
gcctcatgtgatgacaacattgatagcacgttttgtgtgtttgtttcgttatgcaccctgctttgaagttgataatgctttttggtgccagtttagttat |
25524313 |
T |
|
| Q |
216 |
ttgcattgttcccatgttgttttttctttggccttgtttacgattgttttaagtttctgcatgttgcgttttaagtattagtagcttgtttatgcaagtt |
315 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25524312 |
ttacattgttcccatgttgttttttctttggccttgtttacgattgttttaagtttctgcatgttgcgttttaagtattagtagcttgtttatgcaagtt |
25524213 |
T |
|
| Q |
316 |
tagttgttttaaaatttgaaaggagtttgcaaaatttgaaacctgattcttctc |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25524212 |
tagttgttttaaaatttgaaaggagtttgcaaaatttgaaacctgattcttctc |
25524159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 150
Target Start/End: Complemental strand, 25525864 - 25525775
Alignment:
| Q |
64 |
ggagaggttgaaacaacagagagatgatcccca---cgtttaccttccattatttgtctcatgtgaagacaacattgatagcacgttttg |
150 |
Q |
| |
|
|||||||||||||||| ||||||||||||| || ||||||||||| |||||||| ||| ||||||| || | |||||||| |||||| |
|
|
| T |
25525864 |
ggagaggttgaaacaatagagagatgatcctcatgtagtttaccttcctttatttgtttcacgtgaagagaagagtgatagcaggttttg |
25525775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 25520178 - 25520133
Alignment:
| Q |
236 |
tttttctttggccttgtttacgattgttttaagtttctgcatgttg |
281 |
Q |
| |
|
|||||||| ||||||||||| | ||||||||| ||||||||||||| |
|
|
| T |
25520178 |
tttttcttcggccttgtttatgcttgttttaattttctgcatgttg |
25520133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 25525701 - 25525657
Alignment:
| Q |
236 |
tttttctttggccttgtttacgattgttttaagtttctgcatgtt |
280 |
Q |
| |
|
|||||||||||||||||| | | |||||||| ||||||||||||| |
|
|
| T |
25525701 |
tttttctttggccttgttcatgcttgttttatgtttctgcatgtt |
25525657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 26929995 - 26930088
Alignment:
| Q |
64 |
ggagaggttgaaacaacagagagatgatccccacg----tttaccttccattatttgtctcatgtgaagacaacattgatagcacgttttgtgt |
153 |
Q |
| |
|
||||||||| ||||||||||||||||||||| | | |||||||| | |||||||||||||||||| ||| || | ||||| ||||||||| |
|
|
| T |
26929995 |
ggagaggttaaaacaacagagagatgatccctaagttaatttaccttactttatttgtctcatgtgaacacatcagtagtagcaggttttgtgt |
26930088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University