View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2273_low_9 (Length: 359)
Name: NF2273_low_9
Description: NF2273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2273_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 13 - 345
Target Start/End: Complemental strand, 42275896 - 42275565
Alignment:
| Q |
13 |
aatattgtccaaattggcaaaggcaatagaaagcaagtacaataaagcgtgtggtccttgctttaagacaatagattgtcacagatcttcttcaaacttc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42275896 |
aatattgtccaaattggcaaaggcaatagaaagcaagtacaataaagcgtgtggtccttgctttaagacaatagattgtcacagatcttcttcaaacttc |
42275797 |
T |
|
| Q |
113 |
aaagccattggaacaacctgcacgtaatgtagtatcatattttgatgctttccatattctcttctcttcctaccgcaacttcatttaaagaaacctactc |
212 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42275796 |
aaagccattgcaacaacctgcacgtaatgtagtatcatattttgatgctttccatattctcttctcttcctaccgcaactccatttaaagaaacctactc |
42275697 |
T |
|
| Q |
213 |
ttagctcaaaaattgcaccaatttgtacaagtctaagccaaaacaacttgatggcaaaatgcacaaagtctctagttatgttcccaatcctcttgcaaac |
312 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42275696 |
ttagctcaaaaattgcaccaa-ttgtacaagtctaagccaaaacaacttgatggcaaaatgcacaaagtctctagttatgttcccaatcctcttgcaaac |
42275598 |
T |
|
| Q |
313 |
tatatgcttccttttgttcccacaacctctaat |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
42275597 |
tatatgcttccttttgttcccacaacctctaat |
42275565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University