View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2274_high_10 (Length: 469)
Name: NF2274_high_10
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2274_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 6 - 232
Target Start/End: Original strand, 5664789 - 5665016
Alignment:
| Q |
6 |
aggagcagagaatatgatatagggaagccctcaa-attattgtcattgtatttaaaaacttgaatacaattgcacccatataagtctataggtgcttgaa |
104 |
Q |
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| T |
5664789 |
aggaggagagaatatgatacagggaagccctcaatattattgtcattgtatttaaaagcttgaatacaattgcacccatataagtctataggtgcttgaa |
5664888 |
T |
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| Q |
105 |
gatgttttgtggatgttgctgtaaatttttattcctggtttaatcgtgatgggtttcgatgattatatcttgtataatgtacatgcttttacgattgaca |
204 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5664889 |
gatgttttgtggatgttgctgtaaatttttattcctagtttaatcgtgatgggtttcgatgattatatcttgtataatgtacatgcttttatgattgaca |
5664988 |
T |
|
| Q |
205 |
aaaaccattaattgtaatcctcaagaaa |
232 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
5664989 |
aaaaccattaattgtaatcctcaagaaa |
5665016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 243 - 453
Target Start/End: Original strand, 5665054 - 5665264
Alignment:
| Q |
243 |
ctattcgttgacaatgtttccttcattttccatcaaaaaatttccatcttatatttaactcattcatgtatgtaaaactaccattcccacttaaacattt |
342 |
Q |
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| T |
5665054 |
ctattcgttgacaatgtttccttcgttttccatcaaaaaatttccatcttatatttaactcattcatgtatgtaaaattaccattcccacttaaacattt |
5665153 |
T |
|
| Q |
343 |
tttatgcannnnnnnctgcacaaccgttaaccaaatacaacattgttctaaagtaagttataatctagaaatgaaactatatactggacaatgatggaga |
442 |
Q |
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| T |
5665154 |
tttatgcatttttttctgcacaaccgttaaccaaataaaacattgttctaaagtaagttataatctagaaatgaaactatatactggacaatgattgaga |
5665253 |
T |
|
| Q |
443 |
tttctactttt |
453 |
Q |
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||||||||||| |
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| T |
5665254 |
tttctactttt |
5665264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 5663725 - 5663806
Alignment:
| Q |
12 |
agagaatatgatatagggaagccctcaaattattgtcattgtatttaaaaacttgaatacaattgcacccatataagtctat |
93 |
Q |
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||||||||| |||| ||||||||| || |||||| |||||||||||| || |||||||| |||||||||||| ||||| |
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| T |
5663725 |
agagaatatagtatatggaagcccttaatatattgtaattgtatttaaatgtttaaatacaatcgcacccatataattctat |
5663806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 51246693 - 51246641
Alignment:
| Q |
63 |
cttgaatacaattgcacccatataagtc----tataggtgcttgaagatgttt |
111 |
Q |
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| T |
51246693 |
cttgaatacaattgcacccatataagtctacttataggtgcttgtagatgttt |
51246641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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