View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2274_high_18 (Length: 381)
Name: NF2274_high_18
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2274_high_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 16 - 381
Target Start/End: Complemental strand, 16509711 - 16509346
Alignment:
| Q |
16 |
cacattgagattaggaacttcatccaatgatttcaccgattcttgcgtctcgaaaaccacatcaacatcagaactttctaccttcgtttgaaccgttgat |
115 |
Q |
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| T |
16509711 |
cacattgagattaggaacttcttccattgatttcaccgattcttgcgtctcaaaaactacatcaacatcagaactttctaccttcatttgaatcgttgat |
16509612 |
T |
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| Q |
116 |
tcagcctccattgatttcatcgattcatcaacagaagcaactttcgtgttcgtagctttcaaaaaatcatcgaacgcaagcatcgaacgtggttcatcag |
215 |
Q |
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| T |
16509611 |
tcagcttccattgatttcaacgattcatcaacagaagcaactttcgtgttcgtagctttcaaaaaatcatcgaacgcaagcatcgaacgtcgttcatcag |
16509512 |
T |
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| Q |
216 |
attccgtcttacactccaccaccgtctccgccgccggaggttgaaaagcgacggtgacagattttgcctcatcttcaaattcttgaggttcgtctttgac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
16509511 |
attccgtcttacactccaccaccgtctccgccgccggaggttgaaaagcgacggtgacagattttgcctcatcttcaaattcgcgcggttcgtctttgac |
16509412 |
T |
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| Q |
316 |
tttgatgatcgaagctttgcatgcatcagactcgtcagagttagggttttgattcggcggcgttgc |
381 |
Q |
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| T |
16509411 |
tttgatgatcgaagctttgcatgcatcagactcgtcggagttagggttttgattcggcggcgttgc |
16509346 |
T |
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