View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2274_high_19 (Length: 363)
Name: NF2274_high_19
Description: NF2274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2274_high_19 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 224 - 363
Target Start/End: Original strand, 229040 - 229179
Alignment:
| Q |
224 |
aattaacagaaaaatgtaatcaataaaatattcaaagaaaacaacgaatgatggataaactataatagtaatagtgagatacaaaataagtgtcctcaat |
323 |
Q |
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| T |
229040 |
aatttacagaaaaatgtaatcaataaaatattcaaagaaagcaacgaatgatggataaactataatagtaatagtgagatacaaaataagtgtcctcaat |
229139 |
T |
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| Q |
324 |
taatacaaaacctcccctgaaatgaatgtctcaagaatgc |
363 |
Q |
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| T |
229140 |
taatacaaaacctcccctgaaatgaatgtctcaagaatgc |
229179 |
T |
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Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 228527 - 228706
Alignment:
| Q |
19 |
ttagttttaatcctttattttgttctttttaagaataatataannnnnnnnnggagtaagtgtatgaaaacatgagaaggatctcactttataaagttga |
118 |
Q |
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|||||||||||||||||||||||||||||| | | ||||||| |||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
228527 |
ttagttttaatcctttattttgttctttttta--agaatataatttttttttggaggaagtgtatgaaaacatgacaaggatctcactttataaagttga |
228624 |
T |
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| Q |
119 |
tggaaactaaatctaatggttcctgttgtagagtctccctaagttacagaactacgtgaatgtaaatagaaatagaaacatt |
200 |
Q |
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| T |
228625 |
tggaaactaaatctaatggttcctgttgtagagtctccctacgttacagaactacgtaaatgtaaatagaaatagaaacatt |
228706 |
T |
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